Lcur030629.1
Basic Information
- Insect
- Lamproptera curius
- Gene Symbol
- Znf296
- Assembly
- GCA_029286875.1
- Location
- JAGSMT010000227.1:60713-74088[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0024 0.39 12.5 1.4 1 23 220 242 220 242 0.99 2 11 3.4 5.4e+02 2.6 0.0 1 23 249 272 249 272 0.87 3 11 0.029 4.6 9.1 1.4 1 23 303 326 303 326 0.92 4 11 0.0007 0.11 14.2 0.1 2 23 331 353 331 353 0.96 5 11 0.45 71 5.4 0.1 2 20 368 386 367 388 0.93 6 11 0.0025 0.39 12.5 0.2 2 23 400 421 400 421 0.96 7 11 0.00013 0.021 16.5 0.1 2 23 428 450 427 450 0.95 8 11 3.1e-05 0.0049 18.5 1.1 2 23 470 491 469 491 0.97 9 11 1.2e-05 0.0019 19.8 0.3 1 23 497 519 497 519 0.99 10 11 2.5e-05 0.0039 18.8 2.1 1 23 525 547 525 547 0.94 11 11 1.9e-06 0.0003 22.3 0.7 1 23 553 576 553 576 0.97
Sequence Information
- Coding Sequence
- ATGAGCGATCTCCCAGTATGTCGCGTGTGTTTAACCACGGACGTAAAGTTGTACGATTTGTTCAGTTGCAAATTGGCGGAACCCTTCGAAATTCTAACTGGAATACCAATTAACGACTGCGATGGCTTACCCAGTAAGATTTGCACCTACTGCAGTGCATTGCTCGTCAGAAGTGTCTCCTTCAGGGAGAAGTGCTGCAGCACTCAAGAGTTTCTTAAATATTCGCTGCTTGAACAGAAAGAGCTCTCCCTCGACTACTTACAGTCAATCAATAAAGAACTAAATCTATCCTTGCCTTACACAATCACAACATGCACACTATCAACCGACGATCCACTCGACGAAGTCAAAGAAGAAGAATCGGTCCAAGAGCCGCTCGAATTCATTAAGACAGAAGACAGTTCAGAAGATGAAGTGGAACAAGAAATAGAATTGCCCAAGAGGAGAGTGAAAAAAGTGAGGGTACATGAAGAGATGCCGATCGACTTTGAGggtattaacataaaactggAGAGGGATGAAGTGAACGATACCAATTTGAATGATCCCGAAGCATTTGAAGGGATAAGGGATATGGAGATTGTTATATTATCAAAAGAGGAACAGATTGAGGAAGTGCAAGCGAGGAAGAAGTcgtataattacataaactccTTGTTTAAATGCGAAATGTGCTTCAAAGGCTTTGTGGCTGACACGACTTATAGGAATCACATGATGAGGCACGATCCGCGAAGTGGCGACTATGCTTGTGAGGTCTGCCAAGCGAGATGGCCTGAGATGAGGCAACTCCGAGCCCATATATCTTTGGCGCACGAGAGGAAGTACGTTTGCAAGTTGTGCGACCACGTTTCCAGGTCTAGTCACAGAGCCAAGGAGCATTGCAAGTGGCATGCCGGCTTCACTTTTGTGTGCAAGATTTGCGGTGCTAAATTTGCGAAATCAACAAGCCATCTAACGCATGTCCGTTTGAGGCATCCGTCCAACAACAGCTGTGACCTGTGCGGGGAGTCTTTTATAGGGGAATACGGACTGAGAATGCACAAGAGACGGGCCCACAAGAATGAACAgGTGCAAAGCGATGAGGCAAAAGTGGTAATACAATGTGGCAGTTGTCCCGCTGGTTTCTTTAGTACAGAAGCTTTATCAAGGCATTTGGAACACTCTAAAGACGGACATTGTGATGTTGATATGAgATATTGTCCACAATGCGGTGAAGGCTTCCAAAATGACGACACCTTCCAAGAGCATCAGCTGCAACATAAGAAGAAAGAGAAAGTTTACTGCGACGAATGCGGCCAGGGCTTCGCCTCGCCCCGCTCGCTTAGCACGCACCTCTCGCGGGTGCACCTCGGGAGGGCGCCCAAGTCGCGCCGCTCCAGGCAGAGGCCTCCCGCCGACTCGGTGGTCTGCGAGCTGTGCGGCAAGAAGTGCATTacGAAGGCCACTCTAGTGTATCATCAGAGAACACATACAGGGGAGAGGCCGTTCCAGTGTCCACAATGTCCCAAGAGTTTCGGAGTACTGCAGAGGTTGCAGATCCATTTAAGGACCCACACGGGGGAGAGACCGTACAAGTGTCAGAGGTGTCCAAAGGCGTTCAAGCACAAAGCGGCATTGAATAGACATGATCGGGTGCACTCTGGGGCTAAACCGTACGCGTGTCCACATTGCGGGAAGGGATTCTCACAATCGAATTCGATGAAGCTACATGTGAATACAGTACATCTAAAGTTGCCAGCTCCATATAGGAATAGGAAGGGGAAACAAtga
- Protein Sequence
- MSDLPVCRVCLTTDVKLYDLFSCKLAEPFEILTGIPINDCDGLPSKICTYCSALLVRSVSFREKCCSTQEFLKYSLLEQKELSLDYLQSINKELNLSLPYTITTCTLSTDDPLDEVKEEESVQEPLEFIKTEDSSEDEVEQEIELPKRRVKKVRVHEEMPIDFEGINIKLERDEVNDTNLNDPEAFEGIRDMEIVILSKEEQIEEVQARKKSYNYINSLFKCEMCFKGFVADTTYRNHMMRHDPRSGDYACEVCQARWPEMRQLRAHISLAHERKYVCKLCDHVSRSSHRAKEHCKWHAGFTFVCKICGAKFAKSTSHLTHVRLRHPSNNSCDLCGESFIGEYGLRMHKRRAHKNEQVQSDEAKVVIQCGSCPAGFFSTEALSRHLEHSKDGHCDVDMRYCPQCGEGFQNDDTFQEHQLQHKKKEKVYCDECGQGFASPRSLSTHLSRVHLGRAPKSRRSRQRPPADSVVCELCGKKCITKATLVYHQRTHTGERPFQCPQCPKSFGVLQRLQIHLRTHTGERPYKCQRCPKAFKHKAALNRHDRVHSGAKPYACPHCGKGFSQSNSMKLHVNTVHLKLPAPYRNRKGKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -