Lcur021934.1
Basic Information
- Insect
- Lamproptera curius
- Gene Symbol
- rst2
- Assembly
- GCA_029286875.1
- Location
- JAGSMT010000098.1:738993-747748[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0047 0.74 11.6 0.1 3 23 144 164 142 164 0.97 2 15 0.0021 0.33 12.7 2.9 1 23 279 301 279 301 0.98 3 15 7.5e-05 0.012 17.3 1.2 1 23 307 330 307 330 0.96 4 15 0.02 3.2 9.6 6.1 1 23 335 358 335 358 0.93 5 15 2.1e-05 0.0033 19.0 0.4 2 23 525 546 524 546 0.97 6 15 6.2e-05 0.0098 17.5 2.4 1 23 552 574 552 574 0.98 7 15 0.043 6.8 8.6 4.7 1 23 622 644 622 644 0.96 8 15 4.5 7e+02 2.2 0.1 2 23 652 673 651 673 0.94 9 15 0.0032 0.5 12.1 1.9 1 23 679 701 679 701 0.96 10 15 0.00084 0.13 14.0 0.3 1 23 707 729 707 729 0.91 11 15 0.01 1.6 10.5 2.5 1 23 738 760 738 760 0.98 12 15 2.6e-05 0.0041 18.7 0.9 3 23 809 829 808 829 0.97 13 15 0.1 16 7.4 5.4 1 23 844 866 844 866 0.96 14 15 1.5e-06 0.00024 22.6 0.6 1 23 872 894 872 894 0.98 15 15 2e-06 0.00032 22.2 6.6 1 23 900 923 900 923 0.98
Sequence Information
- Coding Sequence
- ATGAACTTGAACACGGGCGTCGAAATAGACCCGTTGGCGACTTACGACTATCAGACGTATGTAAATTACGCCCCGGCTAGTGGCAACCTGGCAATATGCCAAAATGTCGAAGCATACCCTTGTTATGGCGTTAAAAACGAACCATATCCTCACCAGGGCTTAATGAACGGTTGCAGCGACCAGGTAGTTGGTAACACCTCTCGTTTCAAAGCCAACGAAGCTTGCAACAGTACAGCATCAGAAGAAACACCAAACATTAACTCCAATCACTTGAAGGACAATCCAAACGACTTAAAAGAGAACACTCCGGAACTGAATGGCAACAAGGCACCAAGCCCTAGGAGGAGGATAAAGAAGGAATGCAAGAATGGTCAAAAAAGCAACTATCTATCCGAGAAAATAGCTGACAGCGACTTCCCGTTCTACGGCTGCGCGGTATGCAACATTAGTTTTAAACTCCTAACAGACCTGGATCGACATATCGCGACGCATAAAGACCGAATAACCAGTTACGGTTTGCGAATAAAGAACCAAATCAAGCGCAAAAAGCTGCGGAAGGAGCAGAAAAAGTTGAAACGGCTAAAGAAATCGAAAGCGGTCAAACTTGAGAGCCAAGTTAAGGTCGAAATAGAGATCAAACCGGAGGACGGGTATATCGGAGAGAGTAAAGCTGAGGACCGCAAGGAGTCGGACCAATGGAAGGGCGCTTATTCCCAAAAGCAGTCGGAGAACTGTGATAATATAGAATTTGACCGATCAGAGTGTAAGGAGAACGATAATAAAGATATGACGAAGGCGGAGAAGGACAGATCAGATTACAATCTGGAGAAGATGTTCAAATGTTTCGCTTGTCAGAAGCAGTTCACGCTGAGCTATTATCTAAAGCTTCATGTCAGGTCACATACAGATGAGAAACCTTACACTTGTGCGGAGTGCGGGCAGTGCTTTATAACCGCCAGCAAGCTGGGCAGGCACAATAAGAGGATACACCTAGCTATAAGGCATCAGTGCAGGATCTGTTACAAATATTTCTCCAGATTCGAATACCTGACCAGGCATTTTGATAAGAAGCATCCGGAGGACAAATTGGAGGGGGAACCATACGATTACAACGCGATATTGCCATACCTCAAGGAGTTGGAGGATCAGCTGACGAAGCCCGAGACGCCAGTGGAGCCCGAGAGGGGCAACCTGTGGGACGACTGGCCTTCAGACGAGCCCCCGGTCAGCTACGTGGCGGAGCCCCACCGGGTGGACGGGGAGCCCCTGATAACTGCGAAGATCCCTGAGGAAACTAATCCTGATCAGGTGGTCAATGTCTTGGTTCAAGAACCTTGCGCTGACTTCTCGTTGGAAGTGGAAGTAAAAAAGAAGTGGACTCCGATGAAGATGTACCTGATGCTGACAGCCTTAAGGATGAGAGGTGGGGTCCAACAGGTTTCAGAAGGAAACTCTACCTGCAGCCTATCGGATGAAGAGTACTTCCCTTCGAACACTTGGGCGGCTACCCCCCTAGGAGTCGAACCCCCGCCCTCTCCCCCCCGCCGCCGGCCCAAGGCCGAGGGTCCGGTGAGCTGCGAGGTGTGCCAGAAGACCATGAGCTCGGCTTCCTACCTCAGGGTTCACATGAGGACCCACACTGGAGAGAGGCCCTTCAAGTGCTACGTCTGCGGAAGAGGGTTCATAACGTCCAGCAAGATGCATCGGCATGTGTTGACGCACAATGAGAGCTGGGATGAATCGTCACAGGGAGTCAAGGAGGAGTTAAAAACGGAATCGGGAGAAGTGAAGAAGAGAAGGAAACCGAAGAGGCAGAAGGACGAGCCGAAGGAAGGGAATGAGGGTAGACGGAAAAAACGTCCCCACGCGTGCGACTTCTGTCGCAAGCGTTTCTTACACCTCGAAACCCTCCAAGTCCACCAAAGGTCACACGAAGGGGAGAGGCCCTCGTTGAAGTGTCGCTTCTGCCTTCTGGCCTTGAGCGACCTGGACTCGTTGGGGGCCCACGAGAAGGCCCACGAGGGCCCCAGGCCCTATTTGTGCACTCTATGCGGGAAGGGATACAAGAAGCGGGAGACGATGATGTATCATAGAAGGCAGCACAGCGCCGACAAAATGCACCCGTGCCCCGTCTGCCGCAAGGGGTTCGCCTCCCGGGCGAAGCTGAGACAACACTCGGCAGCCCATCGTACAGAGAGATACGTGCTGAGATACGAGTGCCCCGTTTGTGCGCACCTCTTCAACACCAAGTACCACGTAAAGATGCATCTGGTCACCCATCAGAAGGAGGGGCTTATCGTCGAAGAGAACCGCAGCGAGATCCTAGCAATGGTCCTCCAGAACGCGCGTCGCATCCCCAAGCACCCGGACTCCGCCCCGCCCGCCCAAGAGCCCGAAGAGCAGCAGGACGGCCGCAGCAGGATGTGCAACATCTGCGGCCAGGTCTTCGAGCAGTTCCAGCACCTGGAGGAGCACCTCCGCAGCCACGGCACCAAGATCGCCctggaggaggaggaggaggtcAAGAAGCACGTGTGCCAAGTCTGCAGCAAGGGGTTCAAGCTCCACTACTACCTCAAGCTGCACAGCTTCACCCACACGAAAGAGAAGCCGTACATCTGCCAGCAGTGCGGAAAAGGCTTCATCACGCGCGGGAAACTGAAACGGCACCTGGAGACGCATTCCGGCTTGAAGAAGCACCAGTGTCATATCTGCCACAAGTTCTTCACCAGGCCAAGCTACCTTAGGATACACGTGAGGACCATACACGGCACCCAGGACTTCAACTTTCGACTGGAGAAACTCGCGAATGGATAG
- Protein Sequence
- MNLNTGVEIDPLATYDYQTYVNYAPASGNLAICQNVEAYPCYGVKNEPYPHQGLMNGCSDQVVGNTSRFKANEACNSTASEETPNINSNHLKDNPNDLKENTPELNGNKAPSPRRRIKKECKNGQKSNYLSEKIADSDFPFYGCAVCNISFKLLTDLDRHIATHKDRITSYGLRIKNQIKRKKLRKEQKKLKRLKKSKAVKLESQVKVEIEIKPEDGYIGESKAEDRKESDQWKGAYSQKQSENCDNIEFDRSECKENDNKDMTKAEKDRSDYNLEKMFKCFACQKQFTLSYYLKLHVRSHTDEKPYTCAECGQCFITASKLGRHNKRIHLAIRHQCRICYKYFSRFEYLTRHFDKKHPEDKLEGEPYDYNAILPYLKELEDQLTKPETPVEPERGNLWDDWPSDEPPVSYVAEPHRVDGEPLITAKIPEETNPDQVVNVLVQEPCADFSLEVEVKKKWTPMKMYLMLTALRMRGGVQQVSEGNSTCSLSDEEYFPSNTWAATPLGVEPPPSPPRRRPKAEGPVSCEVCQKTMSSASYLRVHMRTHTGERPFKCYVCGRGFITSSKMHRHVLTHNESWDESSQGVKEELKTESGEVKKRRKPKRQKDEPKEGNEGRRKKRPHACDFCRKRFLHLETLQVHQRSHEGERPSLKCRFCLLALSDLDSLGAHEKAHEGPRPYLCTLCGKGYKKRETMMYHRRQHSADKMHPCPVCRKGFASRAKLRQHSAAHRTERYVLRYECPVCAHLFNTKYHVKMHLVTHQKEGLIVEENRSEILAMVLQNARRIPKHPDSAPPAQEPEEQQDGRSRMCNICGQVFEQFQHLEEHLRSHGTKIALEEEEEVKKHVCQVCSKGFKLHYYLKLHSFTHTKEKPYICQQCGKGFITRGKLKRHLETHSGLKKHQCHICHKFFTRPSYLRIHVRTIHGTQDFNFRLEKLANG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -