Lcur022167.1
Basic Information
- Insect
- Lamproptera curius
- Gene Symbol
- -
- Assembly
- GCA_029286875.1
- Location
- JAGSMT010000099.1:2087601-2094267[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 1.7 2.7e+02 3.6 0.1 1 23 25 47 25 47 0.92 2 28 0.045 7.1 8.5 0.3 2 23 119 141 118 141 0.96 3 28 0.0029 0.45 12.3 0.9 3 23 148 169 146 169 0.94 4 28 0.026 4.1 9.3 0.8 1 23 174 197 174 197 0.94 5 28 0.1 17 7.4 0.2 2 23 200 222 199 222 0.96 6 28 0.043 6.8 8.6 1.1 2 22 229 249 228 249 0.95 7 28 0.46 73 5.3 0.5 1 23 307 330 307 330 0.95 8 28 0.001 0.16 13.7 0.8 2 20 412 430 411 434 0.90 9 28 0.0014 0.23 13.2 0.3 1 23 439 462 439 462 0.97 10 28 0.00071 0.11 14.2 0.8 2 23 468 490 468 490 0.92 11 28 0.0018 0.29 12.9 2.7 1 23 494 517 494 517 0.94 12 28 4.9e-05 0.0077 17.8 1.0 2 23 524 545 524 545 0.97 13 28 0.017 2.6 9.9 0.0 1 23 558 580 558 580 0.92 14 28 0.016 2.5 9.9 1.8 3 23 623 643 620 643 0.95 15 28 0.072 11 7.9 0.0 2 23 671 693 670 693 0.95 16 28 0.034 5.3 8.9 2.2 1 23 713 736 713 736 0.97 17 28 0.01 1.7 10.5 3.1 1 23 741 764 741 764 0.95 18 28 0.0093 1.5 10.7 0.4 1 23 769 792 769 792 0.95 19 28 0.00093 0.15 13.8 0.6 2 23 795 817 795 817 0.97 20 28 6.2 9.7e+02 1.8 2.5 2 21 824 843 823 844 0.92 21 28 0.24 38 6.2 2.2 1 23 895 918 895 918 0.90 22 28 0.043 6.9 8.6 0.4 2 23 976 999 975 999 0.95 23 28 0.0019 0.29 12.9 0.3 3 23 1006 1027 1005 1027 0.94 24 28 0.0058 0.91 11.3 6.3 2 23 1032 1054 1031 1054 0.93 25 28 0.003 0.47 12.2 5.9 1 23 1059 1082 1059 1082 0.97 26 28 4e-05 0.0063 18.1 6.3 1 23 1086 1109 1086 1109 0.97 27 28 0.00024 0.039 15.7 0.4 2 23 1116 1137 1115 1137 0.96 28 28 7e-06 0.0011 20.5 1.1 1 23 1143 1165 1143 1165 0.98
Sequence Information
- Coding Sequence
- ATGCGCCGCCGCACGAACCTACTGCTGTTGTTCAACAACAGCACCGTTATACCGTTCAAATGGCGCGGCAGGTACCTCTGCTTTTACTGCAGCGTGAACCTGCCGGAGTACGAGGAGTTGAGGAGGCACACCGCCGCCCACGGCGACTGTAGCACTAAAGACCACTCGCTGAAGGTCCTGAAAGGTGGTCAGAACATGGAGATCAAGGTTGACGTGTCCGAGCTGAGCTGTCGGCTGTGCGAATGCGCGCAGACCAGCCTAGATTCGCTATTGGAGCATTTGGTGGCCGAGCACCAATTGCAGTATGACACGACGGTCGATATGGCGATCGAGGAGTACAGGCTCGTCGATTTGAAGTGTCTCTCGTGTGAAGCGAGCTTTACGTATTTCGGATATTTAGTGTCGCACGTGAACACTAACCATCCGAAGAAGTGTCTGATATGCGACGCGTGTGATCAGAGGTTTAACAAGAAGAGGGATCTGTTTTCGCATATCAAGAATTATCATCGCGAAGGTGGATATACGTGTGAACTATGTGCTAAAAGCTTTCCCTCTCTGAACATATTGAGGAAGCACAGGAGCAATCGCCATCTCACTCAGTGCGAGCTTTGCCAGTTAAGACTGCCGTCCGCGGTCTTGAAAAGGAAACACATGAGGATAGAACACCCGGACACCGGTTCGCTCCAATGCGACAGTTGCCTGAAAGAGTTCCACACTCGTCAAGGGCTGAAGATGCATATAAGGAAATGCAAAAGTCTGGACGACCAAACGATAAAGCTAGAACTACCCGACGCTATGGACGCAGACAGTGCGTACGAAGACAAAGTCCACAGGCCTAGTGTTAAAAGGATCCGGGAGAATATCGTCACCGTCATCAACATGTCCACCGCGATACCGTTCAACTTCTACAAGAACAAGTTCAACTGCTTCTACTGCTCGATGGATTTCCTCGATTCGGACTCTATGAGGGCGCACACGATCAGCGAGCACCCCGTATGCGACGTGAAACAGAAGTGCATACGGAAGTGTCGGGAGTCCGTCGCGTGTGTCAAAATCGATATATCCGCGCTCGCTTGCAAACTTTGCTCGATATCTATAGACGGATTCCATCAGCTGATCGAGCATTTAGTATCGATACACGGCGCCGACTACGATAAGTCGATAACCGGCTACTTTCGCTTCTTCGGCACGCTGTTGAAACACGTGAATTCGGTCCATGCGGGCAACAAGTTGATATGTGCACACTGCGGCCGCGCGTTCGGCCGCGAGCAGAACCTCCGCGTCCACATCTGGCGGCACCACGGCGCGGGTCGCTTCAGATGTAGTGTGTGCTCACTAGATTGCGTCACGCCGTCCGCTCTGTACGCTCACATGGCCAAAGTGCACGGCACCAAGGCGGCAAAGTGTCCCCAGTGTCCGGAGACTTTCGCAACACAGCATTCCCGACAGCGTCACTTGATAGACGCCCACGGTTCCGGGCACAGGTGTCCACACTGCGGGAAGCTGTTTACCAGAGCCTCCTTCGCCCGGGATCACGCTTTACGAACTCATCTGAAGGTCAAAGATGCCGTTTGTACCGTGTGTAGTGCTCGCTTTTTCAATAGCGCTCTACTGAAGCGCCATATGCGACGGCATGGGGGTGGGGACGGGAGTGGGGATGGCGGGTTGGGTTACGCGTGTCAGGTGTGCGGTGAGAGATTTCGGTGGAGACGAGCCTTGAGGGCACACGCGGCGGGGCATGGTGAAAATGCCGTGGAAGATGAACCGACCGAGGGCCTCTATTCCACTGAACGGGTTCGGAGGAATTTGGTAGCGCTTTTCAACAACACCACCGTGGTACCGTTCAAATGGCGCGGCAAATGCTTGTGCTTCTATTGCGGCCAGAGCTACGCCGGGTACGCGGATTTCAGGAAGCACACGCTGTCCCACGAACCGTGCTCGACCCAGGACTATTCTCTAAAGCTGGTCAAGGGCACTCAAGTGGAGGTCAAGGTCGACGTGTCCGACGTCACGTGCGGCAAGTGCGAGGAGCCGTTTGACAAACTGGAGGAGATGATAAATCATTTGATAGTGAAACACCAGATAGACTACGACAGGCGCGTCGAAACCCCTCTCCAGGAATACAGACTGTCAGACTTTCAGTGCCTCTTATGCGAGCAGCGGTTCAAATATTTCGCGTGCCTAGTCAACCACGTGAACGTCACGCACCCGCGTAACAACTTCATATGCGATAAGTGCAATGCGAATTTCAGTAAGAAGAGAGACCTTGCCCTGCATTTTAGACATTATCACCGCGTTGGCGGTTACCCTTGCGCCGAATGTTTATCGACTTTCTCGTCGTACGTACTGTTGCGCAGGCACAGGAACGCGTTTCACTTCAGGAAGTGCAAACGCTGCGGTACCAAATTGGCTTCTTACAGCCTCCTCCTTAAGCACATGCAAGTTGAGCACCCGGACGACGGATCGACCGTGTGCCGGCACTGCTCCAAGCAACTCCATTCCACTCAAGGTCTCAAACAGCATCTAAGCaagtgtaaagaaaataaagaccCGGACAAGTCGGAGGAGTCGCCCGGTTTATCACTGCAAACGCAGAAGAGGCAGGACATGAGGCAGATACGCAAAAATATACAGTGCGTTTTGAACATGTCGACCGCGTTGCCGTTCAAGTTCTTCGCCAAGTTCTGCTGCTTTTACTGCAAGAAAAAGTTCGTAGAGATCGACGAGGTGAGGGAGCACACGCTCGCGCAGCATCCCGTGTGCGATTGGGAGTGCATGAAAAGGTACAAGGGCGATAAGGGCCCGCTCAAAGTGGACATAAGCGATCTCAGACCTAATCGATCATCTGATCGCGAAGCACGACGCGCCCTACGACAAATCGGCGACCGATTGGCTGTCGCCTCACAAAGTCTTCAGGACAACATCCCCTGTCCCATCTGTCACAACGCCACATTCAGATACTTCGGCCTGCTGCTCCGCCATATAAACTCGCAGcacaacaacaacaaccgcaTCTGCGACTTCTGCGGCAGGAGCTTCAGGGGCGTGGCCAATCTGAACATGCACGTGATGCACGCGCACACGGGCGCCTGCGAGTGTGACATCTGCGGCACCAAATACAAGAACCCCTCTTGTCTCAGCCGCCACAAGGCGAGCTGCCACGACGCAAAAGAGTACAAGTGCCCCAAGTGCCCGGAGATGTTCCAATCCCAGTACCACAAACAGAAGCATCTGATCAAATGCCACGGTATCGGCCACAAGTGCGAACATTGTGGCAAAATGTTCACTAGGAATTCGTTCATGAAGGACCACGTCCGCCGGACGCATCTCAAGGAGAAGAACGTGGTGTGTTCCGTTTGCAACGAGCGTTTCTTCGACAATTACACGCTTAAATTGCATATGGTAAGGCACAAGGGTGAGAGAAAGTTTACTTGCGATGCCTGCGACAAATCATTCCTGCGTCGAAGCAACTTGACCAGGCACATGGAGATGCATAAGAAGTATGCACACGGGCAGCAGGCTTGA
- Protein Sequence
- MRRRTNLLLLFNNSTVIPFKWRGRYLCFYCSVNLPEYEELRRHTAAHGDCSTKDHSLKVLKGGQNMEIKVDVSELSCRLCECAQTSLDSLLEHLVAEHQLQYDTTVDMAIEEYRLVDLKCLSCEASFTYFGYLVSHVNTNHPKKCLICDACDQRFNKKRDLFSHIKNYHREGGYTCELCAKSFPSLNILRKHRSNRHLTQCELCQLRLPSAVLKRKHMRIEHPDTGSLQCDSCLKEFHTRQGLKMHIRKCKSLDDQTIKLELPDAMDADSAYEDKVHRPSVKRIRENIVTVINMSTAIPFNFYKNKFNCFYCSMDFLDSDSMRAHTISEHPVCDVKQKCIRKCRESVACVKIDISALACKLCSISIDGFHQLIEHLVSIHGADYDKSITGYFRFFGTLLKHVNSVHAGNKLICAHCGRAFGREQNLRVHIWRHHGAGRFRCSVCSLDCVTPSALYAHMAKVHGTKAAKCPQCPETFATQHSRQRHLIDAHGSGHRCPHCGKLFTRASFARDHALRTHLKVKDAVCTVCSARFFNSALLKRHMRRHGGGDGSGDGGLGYACQVCGERFRWRRALRAHAAGHGENAVEDEPTEGLYSTERVRRNLVALFNNTTVVPFKWRGKCLCFYCGQSYAGYADFRKHTLSHEPCSTQDYSLKLVKGTQVEVKVDVSDVTCGKCEEPFDKLEEMINHLIVKHQIDYDRRVETPLQEYRLSDFQCLLCEQRFKYFACLVNHVNVTHPRNNFICDKCNANFSKKRDLALHFRHYHRVGGYPCAECLSTFSSYVLLRRHRNAFHFRKCKRCGTKLASYSLLLKHMQVEHPDDGSTVCRHCSKQLHSTQGLKQHLSKCKENKDPDKSEESPGLSLQTQKRQDMRQIRKNIQCVLNMSTALPFKFFAKFCCFYCKKKFVEIDEVREHTLAQHPVCDWECMKRYKGDKGPLKVDISDLRPNRSSDREARRALRQIGDRLAVASQSLQDNIPCPICHNATFRYFGLLLRHINSQHNNNNRICDFCGRSFRGVANLNMHVMHAHTGACECDICGTKYKNPSCLSRHKASCHDAKEYKCPKCPEMFQSQYHKQKHLIKCHGIGHKCEHCGKMFTRNSFMKDHVRRTHLKEKNVVCSVCNERFFDNYTLKLHMVRHKGERKFTCDACDKSFLRRSNLTRHMEMHKKYAHGQQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -