Lcur001315.1
Basic Information
- Insect
- Lamproptera curius
- Gene Symbol
- -
- Assembly
- GCA_029286875.1
- Location
- JAGSMT010000003.1:5354058-5361666[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.2 32 6.5 0.3 1 22 494 515 494 515 0.95 2 21 3.9 6.2e+02 2.4 0.3 1 22 557 578 557 580 0.82 3 21 0.16 26 6.8 0.3 3 21 591 609 589 610 0.93 4 21 5 7.9e+02 2.1 0.1 3 23 619 640 617 640 0.88 5 21 0.0063 1 11.2 0.1 3 23 661 682 659 682 0.96 6 21 0.0011 0.17 13.6 2.5 1 23 688 711 688 711 0.95 7 21 0.073 12 7.9 0.0 1 23 737 760 737 760 0.90 8 21 0.0032 0.51 12.1 3.5 1 23 765 787 765 787 0.97 9 21 0.0058 0.91 11.3 0.2 1 23 793 816 793 816 0.95 10 21 0.0014 0.21 13.3 1.3 1 23 829 851 829 851 0.97 11 21 0.0001 0.016 16.8 1.8 1 23 900 923 900 923 0.97 12 21 0.00081 0.13 14.0 1.4 1 23 985 1008 985 1008 0.96 13 21 0.00064 0.1 14.3 2.1 2 23 1032 1054 1031 1054 0.95 14 21 0.023 3.6 9.4 0.1 2 23 1060 1082 1059 1082 0.94 15 21 0.0019 0.3 12.9 0.5 1 21 1125 1145 1125 1146 0.95 16 21 0.00024 0.039 15.6 1.0 1 23 1156 1178 1156 1178 0.93 17 21 6.5e-05 0.01 17.4 0.3 2 23 1267 1289 1267 1289 0.93 18 21 1e-07 1.6e-05 26.3 1.1 3 23 1296 1316 1295 1316 0.98 19 21 0.11 18 7.3 0.0 1 23 1371 1393 1371 1393 0.97 20 21 0.016 2.5 9.9 0.6 1 23 1399 1422 1399 1422 0.95 21 21 0.00015 0.023 16.3 0.4 1 23 1430 1453 1430 1453 0.96
Sequence Information
- Coding Sequence
- atgaGTGCGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTtcctaccaccagttcggatgACTCGGAACCTCCTGTCTTCGCATCAAAGATTAAGGACTGTGTGGCTGTAGAGATAAACGAAGATGACGAGCTGCCAACTAATGTTTGCAGAAAGTGCATGGACAATGTTAATAACTGGTATATTTTTAAGGCTGTATGTGAGAGGACACAAAACAAACTTCAAACTCTGATAAAAAGTGATGGCAGCCAACTAGAAGAGgtcaaaattaaaagtgaacCATTGTCTGATGAAGCTTATGAGGATGGAGTGGTTATTGATGCCGCATATCCTGACCTTGAGAATGATTCAACCTCTAGCAAAGCGCAACCTGAGGGTCCACCTATATTGGCTTCACTTGGTCTTACACCACGGAGTGATAAGGGAATGGATAGCGACAAGGACGAAGATGAAGACTTTGAAGATGAGGTGACCAATACCAATACAAATAAACGATATGCCAGCGTGCCTAATATGCCCGAGGTGTCCATAACAGTAATGCGCCAACTGGCGAGACCTTGCACGCTCGACAAGGCATCCAACAGCTCGCTTCCAAAGACTGCCTCGTCTGTGGTCGATCCTATAGATATTCACATAACGCACGACGCCACGAAATCAATGCACACAGCTTCGACAgCCCTATTGACAACGAAACCAGAAGTATTGGTATCGGAGCCGGAAATTATCAATTCAGCACCAGAAAGTCCGGAAACATTGATTTCTGAACCAGAAATAGCCTCTTTTCAAGTGGAAGCCATACTCTCAGAGCCTGATTACAATCAGCAACAGGACGACGACGACGCTGATGTAGACATGCAAAATAATCAAAGCCAAAATTATGACACTGTCGATATGGATTCTGAGAATGAAATAGAAATCGCTCGACAGCAAGAAGAAGCTGCTGAAGGTGAAGGCGATGGTGATGATAATCAAAGCGATAATGAAGCGGACGATAATGAAGTTGAAAATATTGACAACGATGATGAAAATCACGGAAGGGACGATGACGACAATAGAGAGGACGAAGAAATTAACGACGAGAGAGAAGATGATCAGGCAGAGTATAATCATGAAGAAAATGAGATTGACGACGATGATGACGATCTTCCGCCTATGAGTATTGCTCCAGTTGTAGAAATCAATGAAGACATGCAAACAAATTCGTATGACGGTGAAATGAACGAAGAAGAAGATCTCGACGTAACGGTGAATCCAAACGATACAGTCGATGACGTTAAAGAGTTAGATCCCGATAAACAATACGTGACAAAGACACAACGGGACTTTATCCTTAAGTATCGTGATATAATTGAACAAATTAACACCAAAAGATGCCTTTGTTGTGACAGGGAACACCCACGCCGTAAAGCTGTCATTCAACACTTACAGAAGAATGGCCACAAAGTTCCTAAGCACACGTGCTATAATTGCGTTGTAACATTCGGTCATATTGGCGCATTGCTCAGTCATATGCGGTCAAACACTTGTACCGATTTgtggaaaataatttacaatgaaaACGGTATAACAGATGATCTAGTTCTAGAAGACGAACCTAAAGATACAAAAGTTCAGtacaaagatatatttaacGCAAGGTCCTATGCGTGCAAATTGTGCCCAGCAAAGTTCCAACTTAAgcagtttataatgaaacacGTGTTGGACGTGCACGAAGATGGACAGTCACGAGTGCAGCTCGCATGCGTCCATTGCGGGTCAAGGTTCAAAGATAAAGCGATATGGAAGAAACACATTCGCAACGGAGAATGTACTGTATATATTGCGTGCGATTTATGCTCCGATAGGTTTAGCAACATGCAGAGTTTCAACGATCATGCATTGGCCGTGCACGCTGGCAGTTTTGACCAAtctgataatcaaaacaaatgtgTCGACGGGCGGCCAACTGATTGCCCTGTTTGTGGAAAAAAGAATAGCAGCTATCCCAACTTAGTAAAACACTTGAAAATCATACATAACGAGGAGAAGCCGCACTACTGCCAACATTGCGATTCGAAATTCGAACAGGCTGCAGATCTcaataaacacatatatatgGAGCATTCTGATAGGACACTTGGAGTTCAAAGCATGGAGCCAGATATGTCACTCGTAAAAGAGGAAGCCGAGGAATATCATTATTCATGCACAGAATGCAATGCCATATTCGAGACCGTCGACGCTTGGACAGATCATCAGGTGGCTGAACACAATCAGGTCGCTCACCATTGTGACCAATGCGACAAAAAGTTCCTGAGGCCATCAGAGCTCGCTGAGCACAAGAATACACATTTAAGAGTTAAATTCTACCCTTGCAGCATTTGCTCCAACTCTTACAGCACACCGCAAAAGCTCTCCGAACACGTTCAACAAGAGCATCCCGGAGCTGGGACTTACACTCCCATGGACTCTGAATTTTTCTGCGACATTTGTATCAGATCGTTCAAAAGCCGCCAGGCATATTCTAACCACATGCGCATACACGCTAAGGTGCCTACGACCAATAGGAAACCTGGTGACCCGAAAGGATTCGCCCCGCAAATCGTTGGTAAGCCTATCAGATCGTTCTCTATGGTGCAGCCTAGTTTTCTTTCGTTTAAACCTAATTGCAATGTGCCAAATGCTCCTTACTCATGCGACATTTGCGGAAAAGGATTCATGCACAAGAAAAACATTTGGAAGCATAAAAAGGTCTTACACGCCGACTTCGTTGTTGATAGAAATGATAGTGAGGAAAACACTATGCAGGCGTCCACTGAAGAAGACGAATACAATTATTTGGATGAAAATGGCGCAGTATTATCGACGCCACagtttaacagttttaatttcaCTAATCTAACAAATAGCATACAACAGCAAACCTCTCAAGACGCAATGCCATATTCTTGCGAAATATGCTTTAAACGGTTTCCGCTTAGAACTAGTCTGTGGAAGCATAAACGGGCTAAACATGGCATTATCAACGCCAGTGCCAGCGGTAGCTCTGACTCTCCAATAATGGCTGGCGAAGGCGGCCGTTCCAGTTGCACCATttgcaaaattactttttctgataaaaaatcttattatcgCCACAGGAAAAACGTTCATAAGTCTTCCGCACAGATGTGTAAAATTTGTGGCAAGCCTTTGAGTTCGACTTTGGAATTGTATGAGCATCTAAAAGCCGCTCATGCGAGAGAATTATTAGGATACAATGAGAATCAAGGCACTGCAAAAGCGGAGATTGTTCAGGAGCTAGAAGTGGAATATGAAGCCGACCAGGATTCGGTTGACCCATCCGCAGAATATCAGGCTCGATATCCATGTGACCATTGCGGAAAACAATTTGTTGGCCTCCTGGCGCTTCAAAATCACCAATGTATTACTCAAGTACAGTCTTCGCCGCAAACATTCGACTGCGAGATTTGCCACAAAAGCTACACATCTATTTCTGCCCTAAAGAGCCACCGCGGCTGGCACCTGCGCTCGCCGGACGGCAAGGCGGCCGCGAACAACACAGGCCTATGGATGCCTCAGCACAAAGTCACCAGCAAAGTAAGTAAACACGAGGTCGTCGATCCCGCACAGCTTCCGCGGGCCGCCCATTCGACGCCAGCGAGCGTCGCCAAAAGAAGATTGCCTCCGGAGGTTGAGGTCACCGTCGTCAATCCGAACAAAAAGATGCGCTCGGATGATTCGGTGGAACTCGAACAGCAAAGCAACTCGACGAGCGTCGAGGACAGGTACTGCACGATATGCGACAAGGAGTTCACAAAACGAGCTGCATACCAGCGTCACATGGACGAGGTGCACCAGCCGAACTCCGTGTTCTGTCCAGTGTGCGACAAGAGCTTCACGCGCAAGTCGACGTTGATCGTGCACATGAAGAAGCACTACGAGGGCGGCGAGGGCAGCTCGGGGGCGGCGGAGCACACGGAGGAGGAGCAGTACGAGAGCGAGGGCGGCGGCTCGCGCTCGCACCGCACGCGCCACCGCGGCGACGAGTCGGCCGAGTCGGAGGAGGACGACGGCGCCAGCGTGCCGCCGCCCGGCGAGTTCACGTGCGCGCAGTGCGGCGACGGCGTGGCCACCCCGCGCGACCTCATCGCCCACCGCGCCATGCACGCCACGCCCACCAAGTTCTTCTGCAACATCTGCAAGGTGTACTTCGCGCGCGCCCTCGACCTCTCCTCGCACACGCGCGCGCGTCACGCGGACAACGAGAAGGTGTTCTTCCCGTGCGCGATGTGCGACCGCTTCTACATGAACAAGAAGAGCCTGCAGCGGCACATCGAGATGGCCCACTGA
- Protein Sequence
- MSANYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVFASKIKDCVAVEINEDDELPTNVCRKCMDNVNNWYIFKAVCERTQNKLQTLIKSDGSQLEEVKIKSEPLSDEAYEDGVVIDAAYPDLENDSTSSKAQPEGPPILASLGLTPRSDKGMDSDKDEDEDFEDEVTNTNTNKRYASVPNMPEVSITVMRQLARPCTLDKASNSSLPKTASSVVDPIDIHITHDATKSMHTASTALLTTKPEVLVSEPEIINSAPESPETLISEPEIASFQVEAILSEPDYNQQQDDDDADVDMQNNQSQNYDTVDMDSENEIEIARQQEEAAEGEGDGDDNQSDNEADDNEVENIDNDDENHGRDDDDNREDEEINDEREDDQAEYNHEENEIDDDDDDLPPMSIAPVVEINEDMQTNSYDGEMNEEEDLDVTVNPNDTVDDVKELDPDKQYVTKTQRDFILKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDDLVLEDEPKDTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQLACVHCGSRFKDKAIWKKHIRNGECTVYIACDLCSDRFSNMQSFNDHALAVHAGSFDQSDNQNKCVDGRPTDCPVCGKKNSSYPNLVKHLKIIHNEEKPHYCQHCDSKFEQAADLNKHIYMEHSDRTLGVQSMEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSICSNSYSTPQKLSEHVQQEHPGAGTYTPMDSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDPKGFAPQIVGKPIRSFSMVQPSFLSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADFVVDRNDSEENTMQASTEEDEYNYLDENGAVLSTPQFNSFNFTNLTNSIQQQTSQDAMPYSCEICFKRFPLRTSLWKHKRAKHGIINASASGSSDSPIMAGEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQMCKICGKPLSSTLELYEHLKAAHARELLGYNENQGTAKAEIVQELEVEYEADQDSVDPSAEYQARYPCDHCGKQFVGLLALQNHQCITQVQSSPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKHEVVDPAQLPRAAHSTPASVAKRRLPPEVEVTVVNPNKKMRSDDSVELEQQSNSTSVEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSGAAEHTEEEQYESEGGGSRSHRTRHRGDESAESEEDDGASVPPPGEFTCAQCGDGVATPRDLIAHRAMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -