Lyun008958.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001579.1:84732-118722[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 3.1 44 4.9 0.1 1 21 49 69 49 70 0.94
2 19 0.41 5.8 7.7 2.9 1 21 160 180 160 181 0.95
3 19 0.094 1.3 9.7 4.9 1 23 214 236 214 237 0.96
4 19 0.09 1.3 9.8 0.8 1 23 242 264 242 264 0.98
5 19 1.7 24 5.8 2.3 1 23 269 291 269 291 0.93
6 19 0.87 12 6.7 2.0 1 23 296 318 296 318 0.96
7 19 0.018 0.25 12.0 1.8 1 23 323 345 323 345 0.99
8 19 0.046 0.65 10.7 0.8 1 23 382 404 382 404 0.98
9 19 5.7 80 4.1 2.5 1 23 436 458 436 458 0.90
10 19 0.076 1.1 10.0 2.5 1 23 687 709 687 709 0.99
11 19 0.016 0.22 12.2 2.4 1 23 741 763 741 763 0.99
12 19 0.059 0.84 10.3 1.9 1 23 768 790 768 790 0.98
13 19 0.0024 0.034 14.7 1.6 1 23 795 817 795 817 0.99
14 19 0.016 0.22 12.2 2.4 1 23 842 864 842 864 0.99
15 19 0.059 0.84 10.3 1.9 1 23 869 891 869 891 0.98
16 19 0.0024 0.034 14.7 1.6 1 23 896 918 896 918 0.99
17 19 0.27 3.8 8.3 0.8 1 21 943 963 943 964 0.95
18 19 0.011 0.16 12.6 1.1 1 23 970 992 970 992 0.99
19 19 1.9 26 5.6 2.4 1 17 997 1013 997 1014 0.91

Sequence Information

Coding Sequence
atgatagatGGAGCCTTAAAAGATTCTAGCGACGAAGAATTGGATTTGAAATTGCAACCAGCAGATATTGAAGAGTTGTATCAATACAATGAAAAAGATAATTATGCAGGGCACATGGTTATTGATGACACTCCCATAgaacaatatatttgtaatgaatgtactTTTAAAACAATGGAGAAAGATGTTCTcataaaacacttaaaaattaCCAGAAATGTTCAGTACttttgtaaggaatgtaattatgAGACCCTCTTAGAATGTTCCATAAAAGAACATTCGAGGATTCACAATAGAATTAGTGGTAGATATAttagtaaaaaatgtaatttgaaaGCACCATGGATTTTCTCTTTAACACCACAGCTGATAACTCCAAAAAGTGGTGGTggatatatttgtaaaaaacgtGACTATAAAACACCGCAGGAACATAATctaaaaacatgtaaaaaaattcttacagGTAATGCATTTAAATGTAAGAAATGTGACTATCAGACACTGAGGAAATGTGATCTAAAAGTACATATGCAGATTTATTCTGGTGATGAATATcactgtaaggaatgtgattttaagaCGCTATGGAAACGTAATATTGAATCACATATGAAgattcatacagatgatgaatataactgtaaggaatgtgactataaaacaccatggaaacataGTTTAAAAACACATATGAAGATTCATCATACAGGTGTTAactataaatgtaaggaatgtgacttcACGACACCATGGGAACGTAGTCTAAAAAGACATACGctaattcatacaggtgaaaaatatatatgtaaagaatgtgactataaaactttGTGGGAATATAATCTAAAAACGCACATGAAGATTCatgcaggtgatgaatataagtgtaaagaatgtgactataaaacaccatgggtaaatcatataaaaacacatatgaaGATTCATACcggcgatgaatataaatgtaaggaatgtgactataaaacacaatggaaagATACCCTAAAAACACATATGCAGATTCACATGGGTGATAAacataagtgtgaagaatgtgactataaaacactgtGGGAACGTAATCTAAAAAACTCATATGAAGATTCATACGGAAACATTCACATGGAAGGTGAATATAAATGTacggaatgtgactataaaacacggTGGGCAGGTAGTCTAAAAGCACATAAGAAACTTCATAGTGGTGAGgagtataagtgtaaggaatgtgactataaaacactgtGGGAACGTAATCTAAAAGTGCATACaaaaattcatacgggtgatgaatataaatgtaaggaatgtgattataaaacactctggaaaagtagttttaaaatacataagaaaattcatttagTGCTTTTGCTGTTTGCcatagaaattgaaattgactATTATATTGACTATTATATTGTGAATCTTGTTGATAAGCTATACAATGCCAGTGAAATGTGCAATGTGcccaaaaaaaatgcaacacttgATGATAGTAATGCGGTCAAGTGTACTAAATTtaacggattggaagttaaattcaACGGATTAGACTCGAAGATTGATAATACTCTGATTACTGTTAAAGAGAAACTCTGCGAACTAGATGATAGAGTATTGAAGTTAGAAGAtaacaatgtttatttactagaaaatgtgattagtgaaatcaataaaagaaatagtaaagaatgcaattgcattatttataagTTAGAAGACTCTGAAAATGCTGTTAAAAAAgacattgaattatttaaaaatttgttggctTGTAATGATGaaccttcatttaatattaatgatattaaaCTAATAAGATTAGatTCTAACGACGAAGAATTGGATTTGAAATTGCAACCAGTAGATATTGAAGAGttgtatcaatgcaatgaagaAGATAGTTATGGAGAGCACATGGATATAGATGCCGCTCCTAtacaacaatatttttgtgatgaatataagtgtaaagaatgtgactataaaacactgtgggtaaatcatataaaaacacatatgaaGGTTCATACAGGTggtgaatataaatgtaagaaatgtgactataaaataCCATGCAACAGTGCACTAAAATCACATATTAAGATTCAtataggtgatgaatataaatgtaagaaatgtgattataaaacatggtGGAAATGTAATCTAAAAGTGCATAAGAAAATTCATAccagtgatgaatataaatgtaaggaatgtgactataaaacaccatgCAACAGTGCACTAAAATCACATATTAAGATTCAtataggtgatgaatataagtgtaatgaatgtgactataaaacaccgttggtaaatcatataaaaacacatatgaaaGTTCATACAGGTggtgaatataaatgtaagaaatgtgactataaaacaccatggcaaagtaatttaaaagcgcACAGGAAAATTCACATGGAAAgtgactataaaacactgtGGGAATGTAGTCttaaaatacataagaaaatacatataggtgatgaatataaatgtaaagaatgtgactataaaacaccatgCAACAGTGCACTAAAATCACATATTAAGATTCAtataggtgatgaatataagtgtaatgaatgtgactataaaacaccgttggtaaatcatataaaaacacatatgaaGGTTCATACAGGTggtgaatataaatgtaagaaatgtgactataaaacaccatggcaaagtaatttaaaagcgcACAGGAAAATTCACATGGAAAATGACTATAAAACACTGTGGGAATGTAGTCttaaaatacataagaaaattcatataggtgatgaatataaatgtaaggaatgtgactataaaacaccatgCAACGGTGCTCTAAAAtcacatattaaaatttatacaggtgatgaatataagtgtagggaatgtgattataaaacaacgtgGGAAGTTAATCTAAAAAGACATTTGAAGGTTCATTtgtgtgataaatataagtgtaaaaaatgtgactataaaatattcaggaaaaataatttaaaaacatatgaAGATTCACACAAATGA
Protein Sequence
MIDGALKDSSDEELDLKLQPADIEELYQYNEKDNYAGHMVIDDTPIEQYICNECTFKTMEKDVLIKHLKITRNVQYFCKECNYETLLECSIKEHSRIHNRISGRYISKKCNLKAPWIFSLTPQLITPKSGGGYICKKRDYKTPQEHNLKTCKKILTGNAFKCKKCDYQTLRKCDLKVHMQIYSGDEYHCKECDFKTLWKRNIESHMKIHTDDEYNCKECDYKTPWKHSLKTHMKIHHTGVNYKCKECDFTTPWERSLKRHTLIHTGEKYICKECDYKTLWEYNLKTHMKIHAGDEYKCKECDYKTPWVNHIKTHMKIHTGDEYKCKECDYKTQWKDTLKTHMQIHMGDKHKCEECDYKTLWERNLKNSYEDSYGNIHMEGEYKCTECDYKTRWAGSLKAHKKLHSGEEYKCKECDYKTLWERNLKVHTKIHTGDEYKCKECDYKTLWKSSFKIHKKIHLVLLLFAIEIEIDYYIDYYIVNLVDKLYNASEMCNVPKKNATLDDSNAVKCTKFNGLEVKFNGLDSKIDNTLITVKEKLCELDDRVLKLEDNNVYLLENVISEINKRNSKECNCIIYKLEDSENAVKKDIELFKNLLACNDEPSFNINDIKLIRLDSNDEELDLKLQPVDIEELYQCNEEDSYGEHMDIDAAPIQQYFCDEYKCKECDYKTLWVNHIKTHMKVHTGGEYKCKKCDYKIPCNSALKSHIKIHIGDEYKCKKCDYKTWWKCNLKVHKKIHTSDEYKCKECDYKTPCNSALKSHIKIHIGDEYKCNECDYKTPLVNHIKTHMKVHTGGEYKCKKCDYKTPWQSNLKAHRKIHMESDYKTLWECSLKIHKKIHIGDEYKCKECDYKTPCNSALKSHIKIHIGDEYKCNECDYKTPLVNHIKTHMKVHTGGEYKCKKCDYKTPWQSNLKAHRKIHMENDYKTLWECSLKIHKKIHIGDEYKCKECDYKTPCNGALKSHIKIYTGDEYKCRECDYKTTWEVNLKRHLKVHLCDKYKCKKCDYKIFRKNNLKTYEDSHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-