Lyun014894.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002119.1:3900194-3902835[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00072 0.01 16.4 0.5 1 21 67 87 67 88 0.95 2 17 6.4 90 3.9 0.3 1 9 148 156 148 169 0.77 3 17 7.5 1.1e+02 3.7 0.7 1 10 229 238 229 250 0.73 4 17 0.00072 0.01 16.4 0.5 1 21 329 349 329 350 0.95 5 17 0.2 2.8 8.7 1.7 1 23 410 432 410 432 0.97 6 17 1.9 26 5.6 1.6 1 23 464 486 464 486 0.90 7 17 0.73 10 6.9 1.5 1 23 491 513 491 513 0.96 8 17 8.1 1.1e+02 3.6 4.7 1 23 572 594 572 594 0.94 9 17 0.4 5.7 7.7 1.0 1 23 599 621 599 621 0.98 10 17 4 57 4.6 2.5 1 23 626 648 626 648 0.93 11 17 0.82 12 6.7 2.9 1 23 653 675 653 675 0.96 12 17 0.012 0.17 12.5 1.4 1 23 680 702 680 702 0.98 13 17 0.31 4.4 8.1 0.7 1 23 707 729 707 729 0.96 14 17 0.00041 0.0058 17.1 5.1 1 23 734 756 734 756 0.99 15 17 1.8 25 5.7 0.7 1 23 761 783 761 783 0.93 16 17 0.00046 0.0066 17.0 1.6 1 23 788 810 788 810 0.99 17 17 0.0058 0.082 13.5 3.6 1 23 815 837 815 837 0.99
Sequence Information
- Coding Sequence
- atgaATGTCGACTATGATGAAAGTTATGTGTTAAAATCGGAAGTGATTGTaaaggaaacatttttaaactgtGGAAAATATGGAGATTATGAAaatgaagaattgaaaacaGAGGCGATAGATTTAAAAGTGTCTCTTAAACGTGAAGTTGAAGACCTCGATGAACCTACTGATATGTGTGGTGTATCCATAcatcaatatatttgtaatgaatgtaacttTACTACAAAGAACAAAGGTTctttaagaaaacatttgaatattgCTGCAAATGTTCACTActtttgtaaagaatgtaattttaaaaccctGTTGGGATGTTTCATAAAAGAGCATTCTAGGATTCATGGTCATGTACATGCtactaaaaaatgtaatgatAAGACACCCCAAGTTTTCTCTCTAGCATCACAGttaaaaactccaaaaaaaaagactgaatataagtgtaaggaatgtgattataaaacattgtggaaaCAGGGTCTAAAACAACATTTGAATATTGCTGCAAATGTTCACTActtttgtaaagaatgtaattttaaaaccctGTTGGGATGTTTCATAAAAGAGCATTCTAGGATTCATGGTCATGTACATGCtactaaaaaatgtaatgatAAGACACCCCAAGTTTTCTCTCTAGCATCACAGttaaaaactccaaaaaaaaagactgaatataagtgtaaggaatgtgattataaaacattgtggaaaCAGGGtctaaaacaacatttaaaaaaaaaaaaaaataattgtggtactaaatttctttatataatgaATGTCGACTATGATGAAAGTTATGTGTTAAAATCGGAAGTGATTGTaaaggaaacatttttaaactgtGGAAAATATGGAGATTATGAAaatgaagaattgaaaacaGAGGCGATAGATTTAAAAGTGTCTCTTAAACGTGAAGTTGAAGACCTCGATGAACCTACTGATATGTGTGGTGTATCCATAcatcaatatatttgtaatgaatgtaacttTACTACAAAGAACAAAGGTTctttaagaaaacatttgaatattgCTGCAAATGTTCACTActtttgtaaagaatgtaattttaaaaccctGTTGGGATGTTTCATAAAAGAGCATTCTAGGATTCATGGTCATGTACATGCtactaaaaaatgtaatgatAAGACACCCCAAGTTTTCTCTCTAGCATCACAGttaaaaactccaaaaaaaaagactgaatataagtgtaaggaatgcgattataaaacactatggaaaaagaatttaaagGAACACCtgagaattcatactggtgatgaatataaatgtaaggaatgtgattataaaacattgtggaaaCAGGGTCTAAaacaacatttgaaaattcattcagatgatgaatataagtgtaaggaatgtgattataagacatCATGGGAAAAAAGTATAAAGGATCATACAAAACTTCATAcgggtgaggaatataagtgtgaggaatgtgattataaaacactgtggaaaaagaatctaaaggaacacaagagaattcatactggtgatgaatataaatgtaaagaatgtaattataatacattGTGGAAACAGGGtctaaaacaacatttaaaaattcacaccGGTGATGAacataagtgcaaagaatgtgattttaaaacactgtgggaaaaaaatttaaaagaccatgtgaaaattcatactggtgatgaatataagtgtaagaaatgtgattataaatctctgtggaaaaacaatttaaaaagacatgcaaaaattcatactggtactgaatataagtgtagacaatgtgattataaaacaccatggaaacagagtctaatgcaacatgtgaaaattcatactggggatgaatataaatgtaatgtatgtgattataaaacactgtggaaacagagtctaacacaacatctgaaaattcatactggggATGAACACAAGTGTAATATATGTGACTATAAGACCTTAAAGAAAGATagactaaaggaacatgtcaaaattcatacaggtgatgagtataagtgtaaggaatgtgactataaaacacaatggaaaagcaatctaaaggaacatgtgaaaattcatactggcgttgaatataaatgtaatgaatgtgactataaaacagtgtggaaaaatagattaaaagaacatgtaaatattcatacaggtgttgaatataagtgtactgAATGCGACTATAAATcagcaaaaaaatgtaatctgCAAACACATATGAAAACTCATACGGGTGAAAAATATAAGTGCggggaatgtgattataaaacactatggaaaaagagtctaaaggaacatgtgagaattcatactggtgatgaatataaatgtgtggaatgtgattataaaacagtaaggaAACGTGTTCTAAagaaacatatgaaaattcatagtaatgatgaatataagtgtaacaaatgtgattataaaacagtgtggcaataTCATCTACAAtcgcatatgaaaattcatacgggtgataAATACGTATAA
- Protein Sequence
- MNVDYDESYVLKSEVIVKETFLNCGKYGDYENEELKTEAIDLKVSLKREVEDLDEPTDMCGVSIHQYICNECNFTTKNKGSLRKHLNIAANVHYFCKECNFKTLLGCFIKEHSRIHGHVHATKKCNDKTPQVFSLASQLKTPKKKTEYKCKECDYKTLWKQGLKQHLNIAANVHYFCKECNFKTLLGCFIKEHSRIHGHVHATKKCNDKTPQVFSLASQLKTPKKKTEYKCKECDYKTLWKQGLKQHLKKKKNNCGTKFLYIMNVDYDESYVLKSEVIVKETFLNCGKYGDYENEELKTEAIDLKVSLKREVEDLDEPTDMCGVSIHQYICNECNFTTKNKGSLRKHLNIAANVHYFCKECNFKTLLGCFIKEHSRIHGHVHATKKCNDKTPQVFSLASQLKTPKKKTEYKCKECDYKTLWKKNLKEHLRIHTGDEYKCKECDYKTLWKQGLKQHLKIHSDDEYKCKECDYKTSWEKSIKDHTKLHTGEEYKCEECDYKTLWKKNLKEHKRIHTGDEYKCKECNYNTLWKQGLKQHLKIHTGDEHKCKECDFKTLWEKNLKDHVKIHTGDEYKCKKCDYKSLWKNNLKRHAKIHTGTEYKCRQCDYKTPWKQSLMQHVKIHTGDEYKCNVCDYKTLWKQSLTQHLKIHTGDEHKCNICDYKTLKKDRLKEHVKIHTGDEYKCKECDYKTQWKSNLKEHVKIHTGVEYKCNECDYKTVWKNRLKEHVNIHTGVEYKCTECDYKSAKKCNLQTHMKTHTGEKYKCGECDYKTLWKKSLKEHVRIHTGDEYKCVECDYKTVRKRVLKKHMKIHSNDEYKCNKCDYKTVWQYHLQSHMKIHTGDKYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -