Lyun016820.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- Orc1
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002286.1:6053801-6086793[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 5 71 4.3 3.1 1 23 904 927 904 927 0.97 2 8 0.33 4.7 8.0 0.2 1 20 1127 1146 1127 1150 0.93 3 8 5.9e-05 0.00084 19.8 3.2 1 23 1186 1208 1186 1208 0.98 4 8 0.00032 0.0045 17.5 0.2 2 23 1215 1237 1214 1237 0.92 5 8 0.00083 0.012 16.2 0.5 1 23 1243 1265 1243 1265 0.95 6 8 0.15 2.2 9.0 3.0 1 23 1271 1293 1271 1293 0.97 7 8 0.0083 0.12 13.0 6.0 1 23 1299 1322 1299 1322 0.98 8 8 7.8 1.1e+02 3.7 2.5 1 23 1331 1354 1331 1354 0.94
Sequence Information
- Coding Sequence
- ATGCCTACTTTCaaaattcaagaacaaatatatCACCATGTTGGTTCATTTCTACCTGTTTTGGATgctgaaattaaacattttgtttatatttcacTTCAACACCCAGTTAGGGTTATTGAAACTGCAAGATTATCTGAAAATCCAATTCCACTTGATAATGTAAAAAAGAAGTGCAGCGTGCTTTTTGCTGCTGTTGATGATCCTATGTTCAAACATCTacgtaataaatacaaatttgacATATATTCCTGTAGGTATAAACTTGACTCTCAACGCCTCATTCCATTATATGCACGTACTGGCTTTGATCAAGAGGAATCTTTAAGAGATGAGTCAGATTCTTTTGCAAAATTATGTCAACCTGGTTATAGTCGTACTAACCATTCAAAACGAAAGTTAAACTATACTTCTCTCAATTTAACATCAGAATCTGAAACTGAGGAATTAAGTAAGGATAAGAAAAGACTagtaattgcattaaaaaatttgaaacttacaTCAACGTCCAAAGAATGTGAACACTCAGAaaatttgtgcaacaaaacCAAATCTGCAAAACAGGTATTGGGAGATTCATTTGAAGAACCTGGTGTATCATATACAATTGTGAATACACATTGTGATAGTCATTctataaaactaaaattcaaaCTTGATAATCCTATAGTGTATCCTACTATATTGACAGATGAagttgttaaaatgaaatcaccTATAAAACTGggatgtattaaaaaaattgacaacagAATAGAAATCTGTGAAGGTAGAACAGTAGAGTCAGATAATGAAAACGATGGAGAGACATCGGAAAAATGCATTGCACCTATTAAAACACCAGCCAAAATAAATCTCAGGCGTTCAACGAGGACGGTTGAAAGAAAATCATATTCAAAGTTGTTTTTGTATGAAGCATATACCACACCCCACTCAAATTCCATAACTAAAAAAGTAGCAAAATCTTTATCAACTGATACAAAAAGTAGAATACGAAGAACTGTAAAAATCCCAAAACGATATGGGGTTAACTCTGGCGAAGAAACATTACCAGATCATTCGAAAAAAGaACACTCTGAAAttgtttcttcaaataatgtatctactaaaaaaaatattgactatAGATTAAAGTCTAGACGAAGTCTACGTACAATCAAACGCCCAATTCGATATGTCTGTCCTAGTACAAGTCCATCACAACAGATGATTTCTACACCTTCAGAATTAAATAATGTTAGCAAGAGTGACACAGAGATCGAGTCAAAAAAACCTAAAACAACTTTACTTAGATCTGAGAAagTGAAACTAGCAAAATCAACATTAATAGAGAATGAGGATGAAGACacaagtgatattttaaatacccCATGCAGATCTAAGAATTCTATAACCAGTACTCCAAAAAGTATAAAGAATACTCCATCTGTAAGAGCAAGAATGGTCCGACAAGGTGCTATTACTCCATCAGTGCAAGCTagacaaaaagctattataagaAATGACACTCCTTTATCGACAGCTCGTAATATGCTACATGTTTCATATGTACCAAAAGGTTTATCTTGCCGTGAACAGGAATACTTTGacattgcaaattttttaaagGGCAAACTTATGGATGGCTGTGGAGGttgtatgtATGTATCTGGAGTACCTGGAACTGGAAAAACTGCTACTGTTTCAAATGTAATTGAAGATTTGCAAGAATTAGCTGAGTCCAGCAAAATTCCATcatataaatacattaatattaatGGTATGCAGCTAAGTGAGCCCAGACAAGCGTATGTAGAGATTATCAAGCAGTTGCAAGGAAAAACAATGCACTGGGAGCAAGCACAAACCAGCTTAGAAAATGTGTTCACTAAAACACAAAAGAAGTCTTTGCCAATAATTATGGTCATTGATGAGcttgATATTTTGTGTACTAAAAGGCAAGATGTTGTTTATAATCTATTAGATTGgtcaacaaaaacaaagtgTCAACTTATTGTTGTTACCATTGCGAATACTATGGATTTACCTGAAAGATTATTACTGGGAAGGGTAACCAGCAGATTAGGTTTGACAAGACTTACATTTCAACCATACACACATAAGCAACTGCAAGAAATAGTTACCACACGTCTGTTAGGTACAGATTCTTTCAATTCTGATGCAATTCAACTTGTCGCTCGAAAGGTTGCCTCTGTCTCAGGAGATGCGAGGCGGGCATTAGATATATGCAGAAAAGCAGCTGAAATTGCCGAAGTAGAGGGCAAATACACTTTAGTGACTATGGTTCATGTTAATGCAGCACTAAATGCTATGATTACACAACCAAAAGTACAAGCTATTAAACATTGTTCTGTattggaaaaattaattttacagtcTATAGTTGCAGAGGAATGTTTTCCAGTAATAGGAAGCTGTCAAATATCCTCCATATTATCAAACTTAGATCCAACAGCTTCAGAAAAATGTGTACAAAGTGCACCCATCATATCGGAACCGATGGATTTAATAATACTAGAAAATCCTGATTATAAAGTATCCACCCATGGGGATTTACAATCGGGGTCATCCGAATTTATACTTTTGAAAGAAAATGGGGAGAGCAATGGCACCGCAAATGCTTTACCAAATGAATGCATTGATTCAAAGGAAAACGTaaaggataataaaaaaactaaaaagacaaaagattttgaaaatatactttattttgtttgcaaCCTGTGCCCTTATTTGTgtattaaatattctaaaattacgCATCATTTAAAAGTTGAACATAAACACAAAGTTTCTTCAAAGCCTTTGCAGTTGAAGTGTCCAGCTTGtcctaatatattttttcataaacttCCATTACGATCCCATCTAGTATATGACCATAAAGTGGGTAGCATGGATTTACCTAAAATTACCCAGGcagttacttatttttcaaaaaaaggcaTTAGTGCATCAGATAAAACCATGAGACCAAAGATCAATGACATACCTGAGAGCGAAAtatgttataaaaatgaaaccgattctaaattaataaaaagattaatgAGTACAGATGTTGACATAGACAAACTTAAAGAATCCACAATGAATTCAGATTCGTGTCatgcacaaaaaatacaaatattaaaaagtgtggAGTGTAAAAGTGCAGTTGAGGATCTCGAATTACCCATAGTGCCGGAAGTGacaaattcacatttaataacaattccTTTTAGCGAACCTTTGAACGATGCGAAGAAAAAAACTGATCCAGTGTCAAAATTTATAGatcaaaaaaagttgttaaagtGTACTCTGCCTATGTGTAAAATACGATTACAGGATCCTGAGAAGATGGACTACCACATACAGTGTCACTCAGATGGGAGTTTTAAATGCCCCGAATGTTTGGAAATCTTTTCCTTTTGGAAACCACTAACAGGTCACTTATGGCGGCTACATAGAATTGATATGGAACTACACTCTTGCGatttatgtgattataaatcatTTAGTTTGGGAAAACTAAACAACATTCATAGATTAATACACGGTGACCTTAAAGCATTCACTTGTGAGGTGTGccaaaaaagctttaaaaatatgaaacaatTGAGAAATCACAAAATGACAcatagtaataaatttaatcagAGTTGTGCGATTTGTGACAAAGTATTTTCAAATAGGAGGCAAATGAAGGTGCATATGGATGGAgtgcataataaaataaaaccatttttgtGTAACTATTGCGGTTATAAAGGTGCTTCCAAGAGTGCACTAAAGATGCACATACGTCAACATACTGgcGAAAAACCATTTTCATGCGATTCTTGCGAGTACACAACAGCAGATCACAATTCATTGAGACGTCACAAACTTCGCCACACTGGCtataaaccttataaatgtGAACATTGTAATTATGCTTGTATACAAAGCACTACATATAAAGTGCATTTAAGGACAAAACATCCAGGGTTAGAAAAAGATCACTTGTTCATTTGTTCAAAGTGTCAATTTAAAACTGTTAATCACGATATGTATTTGTCACATTTATTTGTAATGCATGAGGAAAAAGTAACTGCTTTAACATAA
- Protein Sequence
- MPTFKIQEQIYHHVGSFLPVLDAEIKHFVYISLQHPVRVIETARLSENPIPLDNVKKKCSVLFAAVDDPMFKHLRNKYKFDIYSCRYKLDSQRLIPLYARTGFDQEESLRDESDSFAKLCQPGYSRTNHSKRKLNYTSLNLTSESETEELSKDKKRLVIALKNLKLTSTSKECEHSENLCNKTKSAKQVLGDSFEEPGVSYTIVNTHCDSHSIKLKFKLDNPIVYPTILTDEVVKMKSPIKLGCIKKIDNRIEICEGRTVESDNENDGETSEKCIAPIKTPAKINLRRSTRTVERKSYSKLFLYEAYTTPHSNSITKKVAKSLSTDTKSRIRRTVKIPKRYGVNSGEETLPDHSKKEHSEIVSSNNVSTKKNIDYRLKSRRSLRTIKRPIRYVCPSTSPSQQMISTPSELNNVSKSDTEIESKKPKTTLLRSEKVKLAKSTLIENEDEDTSDILNTPCRSKNSITSTPKSIKNTPSVRARMVRQGAITPSVQARQKAIIRNDTPLSTARNMLHVSYVPKGLSCREQEYFDIANFLKGKLMDGCGGCMYVSGVPGTGKTATVSNVIEDLQELAESSKIPSYKYININGMQLSEPRQAYVEIIKQLQGKTMHWEQAQTSLENVFTKTQKKSLPIIMVIDELDILCTKRQDVVYNLLDWSTKTKCQLIVVTIANTMDLPERLLLGRVTSRLGLTRLTFQPYTHKQLQEIVTTRLLGTDSFNSDAIQLVARKVASVSGDARRALDICRKAAEIAEVEGKYTLVTMVHVNAALNAMITQPKVQAIKHCSVLEKLILQSIVAEECFPVIGSCQISSILSNLDPTASEKCVQSAPIISEPMDLIILENPDYKVSTHGDLQSGSSEFILLKENGESNGTANALPNECIDSKENVKDNKKTKKTKDFENILYFVCNLCPYLCIKYSKITHHLKVEHKHKVSSKPLQLKCPACPNIFFHKLPLRSHLVYDHKVGSMDLPKITQAVTYFSKKGISASDKTMRPKINDIPESEICYKNETDSKLIKRLMSTDVDIDKLKESTMNSDSCHAQKIQILKSVECKSAVEDLELPIVPEVTNSHLITIPFSEPLNDAKKKTDPVSKFIDQKKLLKCTLPMCKIRLQDPEKMDYHIQCHSDGSFKCPECLEIFSFWKPLTGHLWRLHRIDMELHSCDLCDYKSFSLGKLNNIHRLIHGDLKAFTCEVCQKSFKNMKQLRNHKMTHSNKFNQSCAICDKVFSNRRQMKVHMDGVHNKIKPFLCNYCGYKGASKSALKMHIRQHTGEKPFSCDSCEYTTADHNSLRRHKLRHTGYKPYKCEHCNYACIQSTTYKVHLRTKHPGLEKDHLFICSKCQFKTVNHDMYLSHLFVMHEEKVTALT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -