Lyun014885.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002119.1:3776576-3788784[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.032 0.45 11.2 0.6 1 23 37 59 37 59 0.98
2 35 2.3 33 5.3 2.1 1 23 63 85 63 85 0.97
3 35 2.4 34 5.3 1.9 1 23 90 112 90 112 0.94
4 35 2.7 39 5.1 1.6 1 23 117 139 117 139 0.92
5 35 0.31 4.4 8.1 1.5 1 23 144 166 144 166 0.98
6 35 1.3 18 6.1 1.5 1 23 171 193 171 193 0.95
7 35 1.4 20 6.0 2.0 1 23 198 220 198 220 0.95
8 35 0.94 13 6.6 1.4 1 23 225 247 225 247 0.95
9 35 5 71 4.3 2.0 1 23 252 274 252 274 0.92
10 35 1.3 18 6.1 1.5 1 23 279 301 279 301 0.95
11 35 6.9 98 3.8 0.8 1 23 306 328 306 328 0.90
12 35 1.3 18 6.1 1.5 1 23 333 355 333 355 0.95
13 35 0.31 4.4 8.1 1.5 1 23 360 382 360 382 0.98
14 35 0.0085 0.12 13.0 1.2 1 21 387 407 387 408 0.96
15 35 0.011 0.15 12.7 0.9 1 23 471 493 471 493 0.97
16 35 0.00064 0.0091 16.5 5.5 1 23 498 520 498 520 0.99
17 35 0.00026 0.0037 17.8 1.2 1 23 525 547 525 547 0.99
18 35 2.4 34 5.3 1.9 1 23 579 601 579 601 0.94
19 35 6.9 98 3.8 0.8 1 23 606 628 606 628 0.90
20 35 9.5 1.3e+02 3.4 1.5 1 23 660 682 660 682 0.87
21 35 0.018 0.25 12.0 1.6 1 23 687 709 687 709 0.99
22 35 2.1e-05 0.00029 21.2 3.2 1 23 714 736 714 736 0.99
23 35 2.6 37 5.2 2.9 1 21 778 798 778 799 0.93
24 35 2.6 38 5.1 1.0 1 23 859 881 859 881 0.92
25 35 2.6 38 5.1 1.0 1 23 886 908 886 908 0.92
26 35 1.1 16 6.3 1.0 1 23 940 962 940 962 0.94
27 35 1.2 17 6.2 1.1 1 23 994 1016 994 1016 0.94
28 35 0.054 0.76 10.5 5.4 1 23 1021 1043 1021 1043 0.99
29 35 0.21 3 8.6 1.3 1 23 1048 1070 1048 1070 0.98
30 35 3.5 50 4.8 1.3 1 23 1129 1151 1129 1151 0.90
31 35 0.62 8.8 7.1 1.5 1 23 1156 1178 1156 1178 0.96
32 35 0.076 1.1 10.0 0.4 1 23 1183 1205 1183 1205 0.97
33 35 1.6 22 5.9 5.2 1 23 1210 1232 1210 1232 0.97
34 35 0.013 0.19 12.4 1.3 1 23 1237 1259 1237 1259 0.99
35 35 6.6 93 3.9 0.4 5 23 1265 1283 1264 1283 0.96

Sequence Information

Coding Sequence
atgagaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaaacaCTATGGAAAaagaatctaaaggaacatgtgaaaattcatactggtgatgaatataagtgcaaagaatgtgattataaaacaccatggaaacaaagtctaaaggcacatgtgaaaattcatactgatgaatttaagtgtaaggaatgtaattttaaaacacagtggaaacagagtctaaaggaacatgtgaaaattcatactggtgacgaatacaagtgtaaggaatgcaattataaaacactatggaaaaagaatctaaaggaacatgtgaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacactatggaaaaagaatctaaaggaacatgagaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacacagtggaaacagagtctaaaggaacatgtgaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacactatggaaaaagaatctaaaggaacatgtgaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacacagtggaaacagagtctaaaggaacattcaaaaattcatactggtgaaaaatataagtgtaaggaatgtgattataaaacacagtggaaacagagtctaaaagaacatggaaaaattcatactggtgacgaatacaagtgtaaggaatgcaattataaaacactatggaaaaagaatctaaaggaacatgagaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacactatggaaaaagaatctaaaggaacatgtaaaaattcatactggtgatgaatataactgtaaggaatgtgattataaaacactttggaaacagagtctaaaggaacatgtgagaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacactatggaaaaagaatctaaaggaacatgtgaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacacagtggaaacagagtctaaaggaacatgtgaaaattcatactggtgatgaatataagtgtaatgaatgccATTTCATTACAACAAAGAAAGATTCTCTAACAGAACATTtgaaagttactaaaaatattcaatattctTGTAAGGAATGTAAGTTTAAAACTCTATTAGGATGTTCAATAAAACAACATTTAGGAATTCATAACAGTGTGGGTTATAAgcatattactaaaaaaagtaattataagaCACTACAAATATTCTCTTTGGCACCACTGTTGAAATTTCCAAAAACTGGTAACCAATATATTtgcaaagaatgtgactataaaacactgcGGAAATGGAGTCTAAgagaacatatgaaaattcataccggtgatgaatataagtgtaaggaatgtcattataaaacagtaaagaAATATAATCTACAAATGCATATTAAAACTCATACCAGCAAAgagtataagtgtaaggaatgtgattatataaCACCGCAGAAAGTCAGACTAAagaaacatatgaaaattcatacttgTGGGAAACATaggtgtaaggaatgtgattataaaacactatggaaaaagaatctaaaggaacatgagaaaattcatactggtgacgaatacaagtgtaaggaatgcaattataaaacactatggaaaaagaatctaaaggaacatgtaaaaattcatactggtgatgaatataactgtaaggaatgtgattataaaacactttggaaacagagtctaaaggaacatgtgagaattcatactggtgatgaatataagtgtaagcaatgtcattataaaacatGGTGGAAAaagaatctaaaggaacatgagaaaattcatactggtgaggaatataagtgcaagcaatgtgattataaaacactgtggaaacaaagtctaaaggaacatgtgaaaattcatactggcgatgaatataagtgtaatgaatgtgattataaaacacagtggaaacagaatctaaagaaccatatcaaaattcatacaggtgatgaatataagtgtaaggaatgcaactataaaacagtgaggaaataTAATCTACaaacacatatgaaaattcatatgggTGATTATGGAAATGAAGAACTGAAAACGGAGCCAGTAGATTTAGGAAAATCTCTTAAACGTGAAGTCAAAGATGATCTCGATGAACTGACCAATATGTGTGGTGTatcaatacatcaatatatttgtaatgaatgttgCTTTACTACAAAGAACAAAGGTtctttaagaaaacattttaaaattgctgCAAATGTTCAATACttttgtaaggaatgtaattttaaaaccctGTTGCGATGTTCAATAAAAGAGCATTCTAGGATTCATGATCATAAACATGTTACTAAAAAATGTGATGTTAAGACACCTCAAGTTTTGTCTTTAGTGTCACAGTTGAAAACTCGAGCAAAAAAgactgaatataagtgtaaggaatgcaattataaaacactgtggaaacaAAATCTAAACGACCACGCAagaattcatactggcgatgaatataaatgtaaggaatgcaattataaaacactgtggaaacaAAATCTAAACGACCACGcaagaattcatactggtgatgaatataaatgtaaggaatgtgattataaaacattgtggaGAAATAGTCTAAAGCTACATGCGAAACTTCATagtggtgaagaatataagtgtaaagaatgtgattataaaacactgtggaaaaAGAATTTAAACGACCATGcaagaattcatactggtgatgaatataaatgtaaggaatgtgattacaaaacgttgtggagaaaaagtctaaaggaacattcgaaacttcatactggtgaagaatataagtgtaaagaatgtgattataaaacactgtggaaaaAGGATCTAAAGGAACACGtgagaattcatactggtaatgaatataagtgtaaggaatgtgattataaaacacactggaaaagcaatttaaagaaacatgtaAAACGTCATACTGCTGAGGAatttaagtgtaaggaatgtgatttcaaaacagtgtggaaacagagtctaacgcaacatgtgaaaattcatacaagagATGAATATAAGGGTaaggaatgcgattataaaactttgttgaaaaagaaTCTAAACGACTATGcaagaattcatactggtgatgaatacaaaTGTAAGGAATGTTATTACAAAACACTGTGGAGAAAGAATCTAAATGACCATGcgagaattcatactggtgatgaatataaatgtaaggaatgtgattataaaacattgtggaaacagagtctaacgcaacatgtgaaaattcatactggtgatgaatataaatgtaaggagtgtgattataaaacaacatggaaacAGAGGTTAGAGGAACATTcaagaattcatactggtgaggaatataagtgtaaggaatgtgattacaaaacacagTGGAAAGGCAATTTAAAAGTACATGTGATAATTCATACTACTGATGAATATAATTGCCAGcagtgtgattttaaaacacactggaaaagcaatttaaagaaacatgtgAAACGTCATAgtggtgaggaatataagtgtaaggaatgtgattacaaaacagtgtggaaaagggGTCTAAGacaacatatgaaaattcatattggAGATCAATACAAGTGTGACTATAAGACCGTCAAGAAAGATCGACTAAAGGAACATGCAAAAATgcatactggtgatgagtataagtataaggaatgtgactataaaacacaatggaatGGCAATTTAAAGGagcatgtgaaaattcatactggtgttgaatataagtgtaattaa
Protein Sequence
MRKFILVMNISVRNVIIKTLWKKNLKEHVKIHTGDEYKCKECDYKTPWKQSLKAHVKIHTDEFKCKECNFKTQWKQSLKEHVKIHTGDEYKCKECNYKTLWKKNLKEHVKIHTGDEYKCKECDYKTLWKKNLKEHEKIHTGDEYKCKECDYKTQWKQSLKEHVKIHTGDEYKCKECDYKTLWKKNLKEHVKIHTGDEYKCKECDYKTQWKQSLKEHSKIHTGEKYKCKECDYKTQWKQSLKEHGKIHTGDEYKCKECNYKTLWKKNLKEHEKIHTGDEYKCKECDYKTLWKKNLKEHVKIHTGDEYNCKECDYKTLWKQSLKEHVRIHTGDEYKCKECDYKTLWKKNLKEHVKIHTGDEYKCKECDYKTQWKQSLKEHVKIHTGDEYKCNECHFITTKKDSLTEHLKVTKNIQYSCKECKFKTLLGCSIKQHLGIHNSVGYKHITKKSNYKTLQIFSLAPLLKFPKTGNQYICKECDYKTLRKWSLREHMKIHTGDEYKCKECHYKTVKKYNLQMHIKTHTSKEYKCKECDYITPQKVRLKKHMKIHTCGKHRCKECDYKTLWKKNLKEHEKIHTGDEYKCKECNYKTLWKKNLKEHVKIHTGDEYNCKECDYKTLWKQSLKEHVRIHTGDEYKCKQCHYKTWWKKNLKEHEKIHTGEEYKCKQCDYKTLWKQSLKEHVKIHTGDEYKCNECDYKTQWKQNLKNHIKIHTGDEYKCKECNYKTVRKYNLQTHMKIHMGDYGNEELKTEPVDLGKSLKREVKDDLDELTNMCGVSIHQYICNECCFTTKNKGSLRKHFKIAANVQYFCKECNFKTLLRCSIKEHSRIHDHKHVTKKCDVKTPQVLSLVSQLKTRAKKTEYKCKECNYKTLWKQNLNDHARIHTGDEYKCKECNYKTLWKQNLNDHARIHTGDEYKCKECDYKTLWRNSLKLHAKLHSGEEYKCKECDYKTLWKKNLNDHARIHTGDEYKCKECDYKTLWRKSLKEHSKLHTGEEYKCKECDYKTLWKKDLKEHVRIHTGNEYKCKECDYKTHWKSNLKKHVKRHTAEEFKCKECDFKTVWKQSLTQHVKIHTRDEYKGKECDYKTLLKKNLNDYARIHTGDEYKCKECYYKTLWRKNLNDHARIHTGDEYKCKECDYKTLWKQSLTQHVKIHTGDEYKCKECDYKTTWKQRLEEHSRIHTGEEYKCKECDYKTQWKGNLKVHVIIHTTDEYNCQQCDFKTHWKSNLKKHVKRHSGEEYKCKECDYKTVWKRGLRQHMKIHIGDQYKCDYKTVKKDRLKEHAKMHTGDEYKYKECDYKTQWNGNLKEHVKIHTGVEYKCN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-