Lyun012677.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010001980.1:49880-54270[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.051 0.72 10.5 0.0 2 23 87 109 86 109 0.95 2 10 0.056 0.79 10.4 4.6 2 23 197 219 197 219 0.91 3 10 2.3 32 5.4 0.1 2 20 467 485 466 489 0.82 4 10 0.0073 0.1 13.2 0.7 2 23 553 575 553 575 0.95 5 10 2.3 32 5.4 0.3 1 23 599 622 599 622 0.92 6 10 0.041 0.58 10.9 3.6 2 23 669 691 668 691 0.96 7 10 0.59 8.4 7.2 3.7 3 23 706 727 704 727 0.92 8 10 0.0012 0.016 15.7 0.7 2 23 777 799 777 799 0.95 9 10 1 14 6.5 0.9 1 23 872 894 872 894 0.97 10 10 0.00069 0.0098 16.4 1.5 2 23 907 929 906 929 0.96
Sequence Information
- Coding Sequence
- ATGACGACATCCGCCACTTTACCCTCCGCAACGGGACCGGTACATGCTGGCGGTTTTTCTACAATTTCCGAGGACACCGCTGTCGACGAATCCGCCTTCGAGACACCGCGACCCACAAAACGATGCTTAATTGCCCCTCTCATGGATTCTTTCAAGAAGCGCCGGAAACAGGCTACTCCAGTTCGTATCTCTGCCGCTGATTCAGATTTAGTTCCTTCAGAAGGTAAGCCGTCTATTGCATCTCCCGAACCTGATTTGCGGTGTCCCTTGTGCCAACTCGCCTTCGGTAAAGCAGAGCGACTTCAAAATCATATTGAAATAGAGCACGCGAATATTCGATGTAAGAAAGAACCGGAAGATACCCATTTGGCTCCTAATTATGAAAGATGCGAGACTCCGATCGAAATGTCTGCTTCCAGAAGCGATTTACCTTGGATGAAcgatttgcaaaataaagaatggATTAACTCCAACGTACACGGATTGCAATTTTCACCGGCCACTTCTTTATTCATGACGCTGCCACAATTTTCGCAACCAGATAGCATTCCGGCAAGACAACCTGTTAGAATTTTTAATCCGGACGCGTATTGCGACTTGTGTAATAAagaattttgcaataaatattttctaaaaactcaCAAAGCGAACAAGCACGGAATTTACACAGATCCTCCAGTTACGGAAATTTTAGGTACGTCGGTTAACATTCCTTCGTATCAATCTAATATCAAAATACCCGTATCTTCTAATTCAAATATCGAAATTGCGTCCGTTAAAACCGATCCGAAACCACAAGTGAATGCAACAAATCCGTTTGGTGAAATATTTCCCAATAATCCACATTTATTTACCAACAAATTGTTTCCTAAAATGTCTAAGGCGCTTTTTGATTCGGAAGCCTCGGAAAACGTCACGCCTCCCGATTTTAATTTATCATCCGGATTAAGTAACGGGCAGGCGGATCCTAATAACATTGTTAACGAGGACGTGATAGCCGAGGAGACGTCGAGCCCAAAACCTGTCCAACACGATCTTTCCTCGctaaaaaacgattttaattttgaagaagGGACGTTTTTCACATCTCCGAGTAAAATGTCTCCCGGTCAACAATCTCGCGAAATTGAGTTAAACCGTTTAAGAAGAATAGGAGTCATGAATCCCAAAGCGTTTTGCGAAATATGTTGCAAagaatattgtaataaatattttttacgaaCGCACAAAATGAAACGTCACGGAATTTATATACCCGAAGACAGTAAAGACGGAAAAGACATAAAAATGGAACTTACTTGGCTACATAATACGCAAACTAGTCCGTTAAATCTTATTATGGCAGAACAAACTAATTCCGATGCTTCCGAACGTAAAACTACTTCGCCCGCAGACATCTCTTGTGAATCTTGCGGTATCAAATTTCAGAACTCAAGTTTAGCCCAATTACATAACGTCAGCGTGCATTCTAGACTGTCACAAACTTCCCACGATATTTCCGAATTATATCAGGAAGAAGTTGTTCGGAATGCAGCCGATTTTTCAAACGCTGGAGAGAAAAACGTTAATTCTGCCGATGCTATTAGTGAAGATCTACAAAAGCTACAAACCATGATACTGCAGTTAAACGATATAGACGCTAATAGATCTGTAAACACCTGCAACGTTTGTAACAAAGAGTTGGAAAACAGGTACTACTTGCACGCGCACATGATGGCAGAACACGGGTTGTTTATGGAAGACACAGGAGAAGTCGAAAAAAATGGAGAAGAAGAAAACGcaggtaataataattttgcttGCGATCTGTGTAGTAAAGAAGTATTTAGTGTCGAAGATATGAAAAAACATCTTTCCGAGTTTCACCCAAATCATCAACACGTGAACgatattaataaagaagaaacgTTAGTTAACGCGGAAAAAGGAGGAACGAAAGGAAATTCCGGAAGCAGTTCGTTCGGTGATAGACGTAGTTCCATGAGTCTGACGCCTAGTAGTAGTTATTGCGAGATTTGCAATAAAGAACtttgcaacaaatattttatgaaaactcACATGCAAAGAATGCACGGAATCGAAATCGAAAATGGAGCTCAGATAGGAGGGGTGATATGCGATATTTGTAATAAAGAACTTTGTAGTAAATACTTTCTACGAGTGCATAAACACAATACGCACGGAATAGTCGAATATGGTTCTAGTTTGCTGCAACCAAGAAAAAATGACACAGAGTCGGCTCCGTTGCTGACATCAGAACCAGATCCGTCACTTAAACCGGGAGACTTGGCAGATTTGAGTCATCGCTACTTTACACATTTTACCGAAGTATGCACAATATGCAGTCGTCGTTTTCGAAGTACAAAATGGTTGAAGGCGCATTTGTTAAGTGATCACGGTCAAGCGGGTGCTGAAAAATGGGCCGAATTAGAACAACAGCTTCAACAGTCTTTGGGACAAAATTGCAAACCAATGGCCAGCGTGAAAACTCCACAAAGTGATCGCACAAGTCCGACATTAAAAATACCGAATGGGAACCAAGACACTACTTCGAAAGTAGGATTGCAAAATGTTTTGTCAACTATATTTGGGTCTGACGAAACTAGTAAAAATTATCATTGTTCCTATTGTCCCTTTTCTACGCCGGTTCTCCCTTTCTTATTCGTTCATGAACGTTCGCATTCGATGCTACCGAACGAAGCTGAAAACGCTTCTCTCAAATGTCCCGTGTGTACTCAAAAGTTTGCGCAATCAGAACTGTTACAACATCACTTGTTTACTCAACATCCTTTCTTTCCTTTGCCACCGTTTTTTAATGGAAGCGTGGAACCTCAAAGCGAAGTCCACACTCCCAAGGAATTTTTCGACGGTCTCGAAGAAGAttcaaaaatagaagaagagtCTTCGTCGCCTTCGGAAAACAACAGACAAGCGTgcggcaaaataaaaaaatctaaacgcCGAGTAAGCCGGTTGGAGTTGTCACCGGAAGTAAATCAGTCGCTAAAAGATTCTGCGAAACGATCACAACTTCCTACGACATACGCGCTACCTCAAAATGAAGAACAAACGGGCACGTCGGGATACACGATGCAAGCATTTCTTCTGGAAGAACCGGCGATCGAGCGTAGGTTTGTACCGTCCGTTGTATATCTACCGGTTTTGCAGAAGCAATTAGCTCCAATAACCGTGACATTCACACTTACCCCAGCTTAA
- Protein Sequence
- MTTSATLPSATGPVHAGGFSTISEDTAVDESAFETPRPTKRCLIAPLMDSFKKRRKQATPVRISAADSDLVPSEGKPSIASPEPDLRCPLCQLAFGKAERLQNHIEIEHANIRCKKEPEDTHLAPNYERCETPIEMSASRSDLPWMNDLQNKEWINSNVHGLQFSPATSLFMTLPQFSQPDSIPARQPVRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYTDPPVTEILGTSVNIPSYQSNIKIPVSSNSNIEIASVKTDPKPQVNATNPFGEIFPNNPHLFTNKLFPKMSKALFDSEASENVTPPDFNLSSGLSNGQADPNNIVNEDVIAEETSSPKPVQHDLSSLKNDFNFEEGTFFTSPSKMSPGQQSREIELNRLRRIGVMNPKAFCEICCKEYCNKYFLRTHKMKRHGIYIPEDSKDGKDIKMELTWLHNTQTSPLNLIMAEQTNSDASERKTTSPADISCESCGIKFQNSSLAQLHNVSVHSRLSQTSHDISELYQEEVVRNAADFSNAGEKNVNSADAISEDLQKLQTMILQLNDIDANRSVNTCNVCNKELENRYYLHAHMMAEHGLFMEDTGEVEKNGEEENAGNNNFACDLCSKEVFSVEDMKKHLSEFHPNHQHVNDINKEETLVNAEKGGTKGNSGSSSFGDRRSSMSLTPSSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICDICNKELCSKYFLRVHKHNTHGIVEYGSSLLQPRKNDTESAPLLTSEPDPSLKPGDLADLSHRYFTHFTEVCTICSRRFRSTKWLKAHLLSDHGQAGAEKWAELEQQLQQSLGQNCKPMASVKTPQSDRTSPTLKIPNGNQDTTSKVGLQNVLSTIFGSDETSKNYHCSYCPFSTPVLPFLFVHERSHSMLPNEAENASLKCPVCTQKFAQSELLQHHLFTQHPFFPLPPFFNGSVEPQSEVHTPKEFFDGLEEDSKIEEESSSPSENNRQACGKIKKSKRRVSRLELSPEVNQSLKDSAKRSQLPTTYALPQNEEQTGTSGYTMQAFLLEEPAIERRFVPSVVYLPVLQKQLAPITVTFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400034;
- 90% Identity
- -
- 80% Identity
- -