Lyun015191.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002131.1:5209054-5211362[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0014 0.02 15.4 0.3 1 21 75 95 75 96 0.96 2 21 0.094 1.3 9.7 4.2 1 23 200 222 200 222 0.98 3 21 1.8 26 5.7 3.4 1 23 227 249 227 249 0.96 4 21 0.071 1 10.1 3.3 1 23 254 276 254 276 0.97 5 21 0.31 4.4 8.1 3.4 1 23 281 303 281 303 0.97 6 21 0.53 7.6 7.3 2.9 1 23 308 330 308 330 0.97 7 21 0.048 0.69 10.6 3.9 1 23 335 357 335 357 0.98 8 21 0.021 0.29 11.8 5.8 1 23 362 384 362 384 0.99 9 21 0.073 1 10.0 2.7 1 23 389 411 389 411 0.97 10 21 0.00011 0.0016 18.9 1.2 1 23 416 438 416 438 0.98 11 21 0.72 10 6.9 4.4 1 23 443 465 443 465 0.97 12 21 5.8 83 4.1 5.4 1 23 470 492 470 492 0.95 13 21 0.78 11 6.8 3.9 1 23 497 519 497 519 0.98 14 21 0.047 0.66 10.7 5.2 1 23 524 546 524 546 0.99 15 21 5.8 83 4.1 5.4 1 23 551 573 551 573 0.95 16 21 2.2 31 5.4 3.3 1 23 578 600 578 600 0.93 17 21 0.78 11 6.8 3.9 1 23 605 627 605 627 0.98 18 21 0.047 0.66 10.7 5.2 1 23 632 654 632 654 0.99 19 21 0.0096 0.14 12.8 3.3 2 23 660 681 659 681 0.97 20 21 0.041 0.59 10.8 3.0 1 23 686 708 686 708 0.97 21 21 7.1 1e+02 3.8 0.1 5 23 717 735 716 735 0.89
Sequence Information
- Coding Sequence
- ATGAAAATCTTAGTTTCGATTATGGATATTGAATACACAGAAAGTTGTTCCATAAAAACTGAAGTTACtgtaacagaaacattttcgtTTTGTGGCAAATACGGAGaTTATGGAAATGAGGAAATAAAATTAGAGCCAGTAGATTTCGAAGAACAATTTAAATGCAAAGAAGAGGATAATCTTGCAGAGCACCCAGATATATTTGTTAATCCTGTACAGCAATATACGTGTAATGAATGCAATTTTAGAACAACACAGAAAGATGATTTaatagaacatttaaaaattattaaaaatgttctaTACTTCTGTAAGGAATGTTACTTTAAAACTCGGCTGGAATGTTCGATGAACAAACATTTGATGGTTTACCATAGAGCAGATGATGGAGATAATAATGAAGTTGAGAaaccacaaattttaaaacggCAGTTGGAATCTATGAAAAATTGCAATgatcaaatttgtaataaatgtcGTTATAAAACATCACATAAACCGTATCATAGAGGTGAACATAATGTTTGCAAGAAATGTGGCTATAAAACGCAGCAAAAACATATCGAAACACGCATGAAaagtcatacaggtgatgaatttaaatgttatgattgtaactataaaacaatgTGGAAACATAATCttgaaagacacattaaaagtcatacaggtgatgaatttaagtgtaaagattgtaatTATACAACTTTGTGGAAACCTGATCTTAAAACTCACATGAAAAATCATACGAgtgacaaatataaatgtaatgattgtgactacaaaacactgTGGAAACAAAATCTTAAAAGACACATTAGAAGTCATATAGGTGATGAATTTAAATGTACTgattgtgactataaaacactgtggaaacaaaatcttcaaagacACATTAAaagtcatacaggtgatgaatttaagtgtaaagattgtaatTATACAACTTTGTGGAAACGTGATCTTAAAACTCACATGAAAAATCATACAAGtgacgaatataaatgtaatgattgtgactacaaaacactgTGGAAACATAATCTTAAAAGACACATTAGaagtcatacaggtgatgaatttaagtgtaaagattgtgattatacaACTCTGTCGAAACATGATTTTAAAACTCACATGAAAAGTCATATAGGTGACgaatttaaatgtaatgattgtgattataaaactctATGGAAATATAATCTTAAAACACACATGAAaagtcatacaggtgatgaatttgagtgtaaagaatgtgattataaaacaccacggAAAAGAAGTTATAAAGCACACATTAGAATTCATAGAGGTgatgaatttaaatgtaaagattgtgattataaaactctGTGGAAACATGATCTCAAAACACATATGAAAAGTCATTCAGGTGAcgaatttaagtgtaaagaatgtgattataaaacactgtggaaacaTCATCTTAAAGCACATGTTAAAagtcatacaggtgacgaatttaagtgtaaaaattgtgattatACAACTCTGTGGAAACATGATCTTAAAACgcacatgaaaattcatacaggtgatgaatttaaatgttatgattgtaactataaaacaatgTGGAAACATAATCTGAAAAGACACATTAGAagtcatacaggtgacgaatttaagtgtaaagaatgtgattataaaacactgtggaaacaTCATCTTAAAGCACATGTTAAAagtcatacaggtgacgaatttaagtgtaaagaatgtgattataaaacactgtggaaacaTCAACTTAAAGCACATGTTAAAAgtcatactggtgacgaatttaagtgtaaaaattgtgattatACAACTCTGTGGAAACATGATCTTAAAACgcacatgaaaattcatacaggtgatgaatttaaatgttatgattgtaactataaaacaatgTGGAAACATAATCTGAAAAGACACATTAGAagtcatacaggtgataaattgaagtgtaaagattgtgattatacaACTCTGCGGAAACATGATCTTAAAACACACATCAACagtcatacaggtgacgaatttaaatgtaatgattgtgactataaaacactgtggaaacaTAATCTTCAAAGACACAttagaattcatacaggtgatgaatttaagtggaaagaatgtgattataaaacaccatggaaaagAAGTTATAAAGCACACATTAGAATTCATAGaggtgatgaatttaagtgtaaagattgtgattataaagctGTGGAAACATGA
- Protein Sequence
- MKILVSIMDIEYTESCSIKTEVTVTETFSFCGKYGDYGNEEIKLEPVDFEEQFKCKEEDNLAEHPDIFVNPVQQYTCNECNFRTTQKDDLIEHLKIIKNVLYFCKECYFKTRLECSMNKHLMVYHRADDGDNNEVEKPQILKRQLESMKNCNDQICNKCRYKTSHKPYHRGEHNVCKKCGYKTQQKHIETRMKSHTGDEFKCYDCNYKTMWKHNLERHIKSHTGDEFKCKDCNYTTLWKPDLKTHMKNHTSDKYKCNDCDYKTLWKQNLKRHIRSHIGDEFKCTDCDYKTLWKQNLQRHIKSHTGDEFKCKDCNYTTLWKRDLKTHMKNHTSDEYKCNDCDYKTLWKHNLKRHIRSHTGDEFKCKDCDYTTLSKHDFKTHMKSHIGDEFKCNDCDYKTLWKYNLKTHMKSHTGDEFECKECDYKTPRKRSYKAHIRIHRGDEFKCKDCDYKTLWKHDLKTHMKSHSGDEFKCKECDYKTLWKHHLKAHVKSHTGDEFKCKNCDYTTLWKHDLKTHMKIHTGDEFKCYDCNYKTMWKHNLKRHIRSHTGDEFKCKECDYKTLWKHHLKAHVKSHTGDEFKCKECDYKTLWKHQLKAHVKSHTGDEFKCKNCDYTTLWKHDLKTHMKIHTGDEFKCYDCNYKTMWKHNLKRHIRSHTGDKLKCKDCDYTTLRKHDLKTHINSHTGDEFKCNDCDYKTLWKHNLQRHIRIHTGDEFKWKECDYKTPWKRSYKAHIRIHRGDEFKCKDCDYKAVET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -