Lyun001768.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010000236.1:447417-449135[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0066 0.094 13.3 0.2 1 21 79 99 79 100 0.95 2 13 0.082 1.2 9.9 1.0 2 23 164 185 164 185 0.96 3 13 8.3 1.2e+02 3.6 0.2 1 9 190 198 190 205 0.88 4 13 0.27 3.8 8.3 0.9 1 23 217 239 217 239 0.97 5 13 0.00058 0.0082 16.7 2.1 1 23 244 266 244 266 0.99 6 13 0.00072 0.01 16.4 2.3 1 23 298 320 298 320 0.98 7 13 0.0036 0.051 14.2 1.4 1 23 325 347 325 347 0.98 8 13 0.001 0.015 15.9 2.9 1 23 352 374 352 374 0.99 9 13 0.13 1.8 9.3 1.8 1 23 387 409 387 409 0.98 10 13 0.34 4.8 8.0 2.7 1 23 414 436 414 436 0.98 11 13 0.011 0.15 12.7 0.3 1 23 441 463 441 463 0.98 12 13 0.18 2.5 8.8 3.1 1 23 468 490 468 490 0.98 13 13 0.0059 0.083 13.5 3.7 1 23 495 517 495 517 0.98
Sequence Information
- Coding Sequence
- atggaCGTTGATTTCactgaaagttttaaaattaaatctgaaGTGAATTTAACAgaaactttttcattttgtgaaaaatacagTGGTAAGAAATGCTCAGATATCGAGAATATTTTTGGACTATGGAATTTAACTCTTGTAGATTGTCAGAATGCAGAATTGAAAACTGAACCAGTAAATTATGAAGAatcgtttaaatgtaatgaaGAATATGATCCTGTTCTGTTGCAACAATATTCCTGCAATGAGTGTAACTTTACTACAACAGAAAAAGATTCTCTAATAGaccatttgaaaattattaaaaatgttgaatatttttgtaagaaatgtaattttaaaacctgGATGGAATGTTCTACAAAAGACCATTTGAGGATTCACAATGAAGtatatattagatatattactgaagaatgtaattttaatacgtcaTGGATTTTTCCATTAATGCCACAGATAAAGACTCCAATAAGTTGTGACCAAAATGTTTGCAATCaatgtaattataccacattACTAAGCAATGATCTAAAaagacatatgaaaattcacacacgtgatgaatataagtgtgaagaatgtgattataaaacactgtggaaagATCTTATGATGGATCATtgcaaaattcatacaggtaatgaatatgaatgtaatgaatgtgattataaaacaatgtggAAATTTTATctgaaggaacatgtcaaaattcatgcaggtaatgaatataaatgtaaagaatgtgattataaaacagtgcggaaattTTTTCTGAAggcacatgtcaaaattcatacaggtgaagagtataaatgtgaagaatgcgattataaaacagtgtggaaaaagcATATGAAGGATCATtgcaaaattcatacaggtaatgaatataaatgtaaacaatgtgattataaaactgcgCGGAAAAATTCTCTCAAGGATCATGTCAAacttcatactggtgatgaatataagtgtctagagtgtgattttaaaacagtgcggaaatatTATCTGAAGGGACATGTCAAAGTTCATAAaggtgatgagtataaatgtaatgaatgtgattataaaacaacacagAAACCTTGTCTAagggaacatgtcaaaattcatacagatagacacgtcaaaattcacacaggtgatgaatataagtgtaaagaatgtgattataaaacgatatGGAAAaatcgtctaaaggaacatctcaaaatgcatacaggtgatgaatataagtgtgaagaatgcgattataaaacagtgtggaaacattATATGAAGACTcatgttaaaattcacacaggtgataaaTACAAGTGtgaagaatgcgattataaaacagcgtggAAAGATAGTCTTAaagatcatgtcaaaattcacacaggtgatgaatataagtgtaaagaatgtcattataaaacaatatggaaaaaaggTTTAaggcaacatgtcaaaattcatgcaggtgttgaatataagtgtaaaaaatgtgattataaaacagtacaaaaatattatttagataaacacaacaaaattcacactggtgttCAATAtacgtgtaaagaatgtgattatagaacagtatggaaacatagtctaaagcaacataATCTGAGACGTCATGTTAAAAATCACACACCTGATAAATAA
- Protein Sequence
- MDVDFTESFKIKSEVNLTETFSFCEKYSGKKCSDIENIFGLWNLTLVDCQNAELKTEPVNYEESFKCNEEYDPVLLQQYSCNECNFTTTEKDSLIDHLKIIKNVEYFCKKCNFKTWMECSTKDHLRIHNEVYIRYITEECNFNTSWIFPLMPQIKTPISCDQNVCNQCNYTTLLSNDLKRHMKIHTRDEYKCEECDYKTLWKDLMMDHCKIHTGNEYECNECDYKTMWKFYLKEHVKIHAGNEYKCKECDYKTVRKFFLKAHVKIHTGEEYKCEECDYKTVWKKHMKDHCKIHTGNEYKCKQCDYKTARKNSLKDHVKLHTGDEYKCLECDFKTVRKYYLKGHVKVHKGDEYKCNECDYKTTQKPCLREHVKIHTDRHVKIHTGDEYKCKECDYKTIWKNRLKEHLKMHTGDEYKCEECDYKTVWKHYMKTHVKIHTGDKYKCEECDYKTAWKDSLKDHVKIHTGDEYKCKECHYKTIWKKGLRQHVKIHAGVEYKCKKCDYKTVQKYYLDKHNKIHTGVQYTCKECDYRTVWKHSLKQHNLRRHVKNHTPDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -