Lyun007062.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:1982149-1985146[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.028 0.39 11.4 0.1 1 21 66 86 66 87 0.95
2 21 0.053 0.75 10.5 0.8 1 23 163 185 163 185 0.99
3 21 0.02 0.28 11.8 1.3 1 23 190 212 190 212 0.99
4 21 2.4 35 5.3 2.9 1 23 217 239 217 239 0.94
5 21 0.0028 0.04 14.5 4.4 1 23 244 266 244 266 0.99
6 21 1.9 27 5.6 0.5 1 23 271 293 271 293 0.89
7 21 0.0029 0.041 14.5 2.6 1 23 298 320 298 320 0.97
8 21 6.1e-05 0.00086 19.7 1.7 1 23 325 347 325 347 0.99
9 21 0.11 1.5 9.5 2.4 1 23 352 374 352 374 0.99
10 21 0.00029 0.0041 17.6 2.7 1 23 379 401 379 401 0.98
11 21 0.93 13 6.6 2.0 1 23 406 428 406 428 0.96
12 21 0.019 0.27 11.9 0.7 1 23 433 455 433 455 0.98
13 21 0.93 13 6.6 0.7 1 23 460 482 460 482 0.95
14 21 5 71 4.3 0.7 1 19 487 505 487 507 0.77
15 21 1.6 23 5.8 5.7 1 23 514 536 514 536 0.97
16 21 0.61 8.7 7.1 0.9 5 23 545 563 544 563 0.95
17 21 1.2 16 6.3 4.6 1 23 568 590 568 590 0.97
18 21 0.61 8.7 7.1 0.9 5 23 599 617 598 617 0.95
19 21 1.2 16 6.3 7.9 1 23 622 644 622 644 0.99
20 21 0.00055 0.0078 16.7 1.0 1 23 649 671 649 671 0.99
21 21 8.4 1.2e+02 3.6 0.9 1 23 676 698 676 698 0.93

Sequence Information

Coding Sequence
ATGGATGTGgattataatgaaagttatccaATAAAATCAGAAGTTATTGTAGAGGAAACATTTTCCTACTgtggaaaatatgaagATTATGAAGAAGTGAAAATGGAACCAGTAGATTTCGAAGAGTCTTTTAAATCTGAAATCGATGATAATTTTGTGGAGCACATTGATATATGTGGTGTACCCACAtatcaatatatttgtaatgaatgtaattttattacaacagaAAAAGATTCTTTAATAGAACATTTGAGaattactaaaaacattaaacatttttgtaagGAGCATTCCAGGATTCACAAGATTGCTGGTAGActtattactaaaaaatgtaatttaaaaaaattacaacttttcaCTTTAGCATCAGAGTTGAAAACTCCAAAAAATGGAGACAAATATAATTGCAAAGAacgtgattataaaacacagagGAAAGGGAggttaaaggaacatgtgaaaattcataatggtgatgaatataaatgtaacgaatgtgtttataaaacaccatggaaacagagtctccaaaaacatataaaaattcatactgacattaaatataagtgtaaggaatgtgattataaaacaagttGGAGACAAAGTCTAATGATTCATGTTAAAACTCATACTgatgatgaatacaagtgtaaggaatgtgattttaaaacattatggaaaaacaatctaaaggtacatttaaaaatccatactggtgataaatataaatgtaaagaatgtgattataaaacgtcatggaaacatagtctaaagATTCATATGAAAACTCATACTgatgatgaatacaagtgtaaggaatgtgattttaaaacagtatggaaacagAGTTTAGGGGAACATGCCAAAATTCAtcgtggtgatgaatataagtgtaaggaatgtgactataaaacattcAGGAAAGATAGACTAAAGGATCATGTGAAAGttcataccggtgatgaatataagtgtaaagagtgtgactataaaacagtgaggaaagatACACTAAAGGAACATctgaaaattcataccggtgatgaatataagtgtaacaaatgtatttataaaacaccacgAAAACAGAGGCTAAGAGAccacatgaaaattcatactgatccTGAATTTAAGTGTAAGAAGTGTGATTTTGAAACACGAATGAAAGATAATCTAACGAAGCATATGACAATTCATATTGGTGATGAATATAGGTGTaacaaatgtatttataaaacaccatggaaacagagtcttaaaaaacacatgaaaattcatactgacgataaatataagtgtaaggaatgtgattataaaacaagttGGGTACAGAGTCTTAACattcatatgaaaattcatactggtgatgaatacaagtgtaaggaatgtgattttaaaacagtatggaagCAGAGTTTAGGGGAACATGCCAAAACTCATTGTGGtaatgagtataagtgtaagaaatgtgactataaaataTTAGGTAAAGATaaactaaaggaacatgtgcaATTTCTTACctgtgatgaatataagtgtaagaaatgtgattataaaacaaggtGGAAACAGTGTTTAACGCAACATGTAAAActtcatactggtaatgaatataagtttaAGGAATGTGACtgtaaaacagtgaggaaaaatacactaaaggaacatgtgaaaattcataccagtggtgaatataagtgtgagaaatgtgattataaaacaaggtGGAAACAGTGTTTAACGCAACATGTAAAActtcatactggtaatgaatataagtttaAGGAATGTGACtgtaaaacagtgaggaaaaatacactaaaggaacatgtgaaaattcataccagtggtgaatataagtgtgagaaatgtgattataaaacaaggtGGAAACATTGTCTAAACCAACATCTAAAGCGtcatagtggtgatgaatataagtgcaaggattgtgactataaaacagtgaggaatgATAGACTAAacgaacatgtgaaaattcatacaggtgaagaatataagtgcaatgaatgtatttataaaacaccatggaaacaaaaGTTAAGAGAACACTTGAAAATCCATACCGAtcctgaatataagtgtaaaaaatgcgattataaaacatgGTGGAAACAGTGTTTAACGCAACATGTAAAActtcatactggtaatgaatataagtttaaggaatgtgactataaaacaatgAGGAAACACAATTTCATAAGAGTGGTTAATACTTACAAGTACACCTAA
Protein Sequence
MDVDYNESYPIKSEVIVEETFSYCGKYEDYEEVKMEPVDFEESFKSEIDDNFVEHIDICGVPTYQYICNECNFITTEKDSLIEHLRITKNIKHFCKEHSRIHKIAGRLITKKCNLKKLQLFTLASELKTPKNGDKYNCKERDYKTQRKGRLKEHVKIHNGDEYKCNECVYKTPWKQSLQKHIKIHTDIKYKCKECDYKTSWRQSLMIHVKTHTDDEYKCKECDFKTLWKNNLKVHLKIHTGDKYKCKECDYKTSWKHSLKIHMKTHTDDEYKCKECDFKTVWKQSLGEHAKIHRGDEYKCKECDYKTFRKDRLKDHVKVHTGDEYKCKECDYKTVRKDTLKEHLKIHTGDEYKCNKCIYKTPRKQRLRDHMKIHTDPEFKCKKCDFETRMKDNLTKHMTIHIGDEYRCNKCIYKTPWKQSLKKHMKIHTDDKYKCKECDYKTSWVQSLNIHMKIHTGDEYKCKECDFKTVWKQSLGEHAKTHCGNEYKCKKCDYKILGKDKLKEHVQFLTCDEYKCKKCDYKTRWKQCLTQHVKLHTGNEYKFKECDCKTVRKNTLKEHVKIHTSGEYKCEKCDYKTRWKQCLTQHVKLHTGNEYKFKECDCKTVRKNTLKEHVKIHTSGEYKCEKCDYKTRWKHCLNQHLKRHSGDEYKCKDCDYKTVRNDRLNEHVKIHTGEEYKCNECIYKTPWKQKLREHLKIHTDPEYKCKKCDYKTWWKQCLTQHVKLHTGNEYKFKECDYKTMRKHNFIRVVNTYKYT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-