Lyun000515.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000058.1:982098-994359[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.0018 0.026 15.1 2.3 1 23 59 81 59 81 0.99
2 24 1.2 17 6.3 0.6 5 23 90 108 89 108 0.95
3 24 0.11 1.6 9.4 0.7 1 23 113 135 113 135 0.98
4 24 0.0062 0.087 13.4 3.5 1 23 194 216 194 216 0.99
5 24 0.26 3.7 8.3 3.0 1 23 221 243 221 243 0.98
6 24 0.65 9.2 7.1 0.3 5 23 252 270 251 270 0.95
7 24 0.0018 0.025 15.1 4.4 1 23 383 405 383 405 0.99
8 24 0.00076 0.011 16.3 3.3 1 23 442 464 442 464 0.99
9 24 0.0056 0.08 13.6 2.7 1 23 548 570 548 570 0.99
10 24 0.0062 0.087 13.4 3.5 1 23 634 656 634 656 0.99
11 24 0.18 2.6 8.8 1.2 1 23 715 737 715 737 0.98
12 24 0.011 0.16 12.6 1.2 1 23 742 764 742 764 0.99
13 24 0.26 3.7 8.3 3.0 1 23 769 791 769 791 0.98
14 24 1.2 18 6.2 0.4 5 23 800 818 799 818 0.92
15 24 0.0018 0.025 15.1 4.4 1 23 823 845 823 845 0.99
16 24 0.011 0.16 12.6 1.2 1 23 850 872 850 872 0.99
17 24 0.0027 0.038 14.6 1.8 1 23 877 899 877 899 0.99
18 24 0.0018 0.025 15.1 4.4 1 23 904 926 904 926 0.99
19 24 0.0026 0.037 14.6 3.9 1 23 958 980 958 980 0.99
20 24 0.0025 0.036 14.7 1.8 1 23 1017 1039 1017 1039 0.99
21 24 0.11 1.6 9.4 0.7 1 23 1044 1066 1044 1066 0.98
22 24 0.011 0.16 12.6 1.2 1 23 1071 1093 1071 1093 0.99
23 24 0.16 2.3 9.0 0.6 5 23 1107 1125 1106 1125 0.96
24 24 0.26 3.7 8.3 3.0 1 23 1157 1179 1157 1179 0.98

Sequence Information

Coding Sequence
ATGGATGTTCATTCCATAGAAAGTTCTGAAATAAAATTCGAAGTGACTTtaacacaaacatttttgttttggggaaaatatgaaggcgatgaatataagtgtaaagaatttgattataaaacagtacagaggAGTTGTCTAatagaacatgtcaaaattcatacagatgataaatataagtgtaaagagtgtgattataaaacagtacagaggAGTTGTCTAatagaacatgtcaaaattcatacagatgataaatataagtataaagaatgtgattataaaacggtacagAAAAGATGTCTAaatgaacatgtcaaaattcatacaggtgatgaatataagtgtaaagagtgtgattataaaacagtgtggaaaattCTTCTAaggcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatttgattataaaacagtatggaaaagatgtttaaaggaacatgttagaattcatacgggtgatgaatataagtgtaaagaatttgattataaaacagtacagaggAGTTGTCTAatagaacatgtcaaaattcatacaggtgttgaatataagtgtaaagagtgtgattataaaacggtacagAAAAGATGTCTAaatgaacatgtcaaaattcatacagatgataaatataagtgtaaagaatgtgattataaaacagtatggaaaagatgtttaaaggaacatgtcagaattcatttggatgataaatataagtataaagaatgtgattataaaacagtacagaggAGTTGTCTAatagaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatttgattataaaacagtacagaggAGTTGTCTAatagaacatgtcaaaattcatacaggtgttgaatataagtgtaaagaatttgattataaaacagtatggaaaagtcatctaaTGGAACATatcagaattcatacaggcgatgaatataagtgtaaagaatttgattataaaacggtacagAAAAGATGTCTAaatgaacatgtcaaaattcatacagatgataaatataagtgtaaagaatttgattataaaacagtgtggaaaattCTTCTAaggcaacatgtcaaaattcatacagatgataaatataagtgtaaaaaatgtgattataaatcggTTCAGAAGagttgtctaaaggaacatgtcagaattcatttggatgataaatataagtatgataaatataagtataaagaatgtgattataaaacagtgtggaaaattCTTCTAaggcaacatgtcaaaattcatatgggtgatgaatataagtgtaaagaatgtgattataaatcggTTCAGAAGagttgtctaaaggaacatgtcagaattcatttggatgataaatataagtgcgatgaatataagtgtaaagaatttgattataaaacagtatggaaaagatgtttaaaggaacatgtcagaattcatttggatgataaatataagtgtaaagaatttgattataaaacagtatggaaaagatgtttaaaggaacatgttagaattcatacgggtgatgaatataagtgtaagagtgtgattataaaacggcaacatgtcaaaattcatacagatgataaatataagtgtaaaaaatgtgattataaaacagtgtggaaaagtcaTCTAATGGAACATatcagaattcatacaggcgatgaatataagtgtaaagaatttgattataaaacagtatggaaaagatgtttaaaggaacatgtcagaattcatttggatgataaatataagtgtaaagaatttgattataaaacagtacagaggAGTTGTCTAatagaacatgtcaaaattcatacagatgataaatataagtgtgatgaatataagtgtaaagagtgtgattataaaacggtacagAAAAGATGTCTAaatgaacatgtcaaaattcatacagatgataaatataagtataaagaatgtgattataaaacagtatggaaaagatgtttaaaggaacatgtcagaattcatttggatgataaatataagtgtaaagaatttgattataaaacagtacagaggAGTTGTCTAatagaacatgtcaaaattcatacaggtgatgaatataagtgtaaaaaatgtgattataaaacagtgtggaaaattCTTCTAaggcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagagtgtgattataaaacggcgtggaaaaatagtttaaagcaacatatcaaaattcatatgggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaagatgtttaaaggaacatgtcagaattcatttggatgataaatataagtataaagaatgtgattataaaacagtatggaaaagtcatctaaTGGAACATATCAGagttcatacaggcgatgaatataagtgtaaaaaatgtgattataaatcggTTCAGAAGagttgtctaaaggaacatgttagaattcatacgggtgatgaatataagtgtaaagagtgtgattataaaacggcgtggaaaaatagtttaaagcaacatatcaaaattcatatgggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaagtcaTCTAATGGAACATatcagaattcatacaggcgatgaatataagtgtaaaaaatgtgattataaatcggTTCAGAAGagttgtctaaaggaacatgttagaattcatacgggtgatgaatataagtgtaaagaatttgattataaaacagtacagagaAGTTGTCTAatagaacatgtcaaaattcatacaggtgttgaatataagtgtaaagagtgtgattataaaacggtacaaaaaagatgtctaaaggaacatgttagaattcatacgggtgatgaatataagtgtaaagaatttgattataaaacagtacagagaAGTTGTCTAatagaacatgtcaaaattcatacagatgataaatataagtgcgatgaatataagtgtaaagagtgtgattataaaacagtgtggaaaagtcaTCTAATGGAACATATCAGagttcatacaggcgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaattCTTCTAaggcaacatgtcaaaattcatacaggtgatgaatataagtgtaaagagtgtgattataaaacggcgtggaaaaatagtttaaagcaacatatcaaaattcatatgggtgatgaatataagtatgataaatataagtataaagaatgtgattataaatcggTTCAGAAGagttgtctaaaggaacatgttagaattcatacgggtgatgaatataagtgtaaagaatttgattataaaacagtatggaaaagatgtttaaaggaacatgttagaattcatacgggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaagatgtttaaaggaacatgttagaattcatacgggtgatgaatataagtgtaagaatgtgattataaaacagtacagagaAGTTGTCTAa
Protein Sequence
MDVHSIESSEIKFEVTLTQTFLFWGKYEGDEYKCKEFDYKTVQRSCLIEHVKIHTDDKYKCKECDYKTVQRSCLIEHVKIHTDDKYKYKECDYKTVQKRCLNEHVKIHTGDEYKCKECDYKTVWKILLRQHVKIHTGDEYKCKEFDYKTVWKRCLKEHVRIHTGDEYKCKEFDYKTVQRSCLIEHVKIHTGVEYKCKECDYKTVQKRCLNEHVKIHTDDKYKCKECDYKTVWKRCLKEHVRIHLDDKYKYKECDYKTVQRSCLIEHVKIHTGDEYKCKEFDYKTVQRSCLIEHVKIHTGVEYKCKEFDYKTVWKSHLMEHIRIHTGDEYKCKEFDYKTVQKRCLNEHVKIHTDDKYKCKEFDYKTVWKILLRQHVKIHTDDKYKCKKCDYKSVQKSCLKEHVRIHLDDKYKYDKYKYKECDYKTVWKILLRQHVKIHMGDEYKCKECDYKSVQKSCLKEHVRIHLDDKYKCDEYKCKEFDYKTVWKRCLKEHVRIHLDDKYKCKEFDYKTVWKRCLKEHVRIHTGDEYKCKSVIIKRQHVKIHTDDKYKCKKCDYKTVWKSHLMEHIRIHTGDEYKCKEFDYKTVWKRCLKEHVRIHLDDKYKCKEFDYKTVQRSCLIEHVKIHTDDKYKCDEYKCKECDYKTVQKRCLNEHVKIHTDDKYKYKECDYKTVWKRCLKEHVRIHLDDKYKCKEFDYKTVQRSCLIEHVKIHTGDEYKCKKCDYKTVWKILLRQHVKIHTGDEYKCKECDYKTAWKNSLKQHIKIHMGDEYKCKECDYKTVWKRCLKEHVRIHLDDKYKYKECDYKTVWKSHLMEHIRVHTGDEYKCKKCDYKSVQKSCLKEHVRIHTGDEYKCKECDYKTAWKNSLKQHIKIHMGDEYKCKECDYKTVWKSHLMEHIRIHTGDEYKCKKCDYKSVQKSCLKEHVRIHTGDEYKCKEFDYKTVQRSCLIEHVKIHTGVEYKCKECDYKTVQKRCLKEHVRIHTGDEYKCKEFDYKTVQRSCLIEHVKIHTDDKYKCDEYKCKECDYKTVWKSHLMEHIRVHTGDEYKCKECDYKTVWKILLRQHVKIHTGDEYKCKECDYKTAWKNSLKQHIKIHMGDEYKYDKYKYKECDYKSVQKSCLKEHVRIHTGDEYKCKEFDYKTVWKRCLKEHVRIHTGDEYKCKECDYKTVWKRCLKEHVRIHTGDEYKCKNVIIKQYREVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-