Lyun007259.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
gw
Assembly
GCA_013368075.1
Location
JABVZV010001223.1:8319880-8360297[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.02 0.28 11.9 1.0 1 20 1360 1379 1360 1380 0.98
2 19 0.075 1.1 10.0 1.5 1 23 1383 1405 1383 1405 0.98
3 19 0.27 3.8 8.3 1.8 2 23 1602 1623 1601 1623 0.97
4 19 0.0057 0.08 13.5 1.4 1 23 1628 1650 1628 1650 0.98
5 19 0.023 0.32 11.7 1.3 1 23 1655 1677 1655 1677 0.99
6 19 0.84 12 6.7 1.6 2 23 1683 1704 1682 1704 0.97
7 19 0.35 4.9 7.9 2.5 1 23 1709 1731 1709 1731 0.98
8 19 0.013 0.18 12.5 2.6 1 23 1763 1785 1763 1785 0.97
9 19 0.011 0.16 12.6 1.2 1 23 1790 1812 1790 1812 0.99
10 19 0.91 13 6.6 5.0 1 23 1817 1839 1817 1839 0.97
11 19 0.018 0.25 12.0 3.1 1 23 1871 1893 1871 1893 0.98
12 19 0.0072 0.1 13.2 1.5 1 23 1898 1920 1898 1920 0.99
13 19 0.19 2.8 8.7 3.8 1 23 1925 1947 1925 1947 0.98
14 19 0.5 7 7.4 4.5 1 23 1952 1974 1952 1974 0.98
15 19 0.085 1.2 9.8 3.8 1 23 1979 2001 1979 2001 0.97
16 19 0.062 0.88 10.3 2.2 1 23 2025 2047 2025 2047 0.97
17 19 0.02 0.29 11.8 1.3 1 23 2052 2074 2052 2074 0.99
18 19 0.44 6.2 7.6 1.8 2 23 2080 2101 2080 2101 0.98
19 19 0.00064 0.0091 16.5 2.3 1 23 2106 2128 2106 2128 0.99

Sequence Information

Coding Sequence
ATGCGCGACCCCACTCCCTCCGAGCCGAAATTTACATTTCCTACCTATCAAGTGCCTCAAGCGTCAGCCATGAGGGGCCGCGCACCCCCAGTACAAGTCGCTAGGGCAGCTGGGGAGGATAGAGCCTACCTCCCAAGCCAACCCTGCGCCTCACCAGGCGTTTATTCTGTGATAATTGGCTCAAGTTGTCCACTTGCTGGCAACTCTAATCTTAGGATGCAATCTGTGACCGAAAATTGTCTTCTGAACTCTGTTACCGTACCAAAAATACAACGTAACGACCACACGACGGTCGCACACAATAATAGCGATAAGTTAGAATGTAAGTTTGGTGCTCTACACTTATTTGGACAAGACATTCCCAACCAAAAGTCTGATAACCTCGAAGGTGACCTCATTAAACTGAACCTCACAAAAATTAAGTCTAGTTCTACTCATTGCAATTCGAACATTACGGATGACAACTATAGTCTTGACAGGCTCGTTAAATTAAGTCAGCGCACACGAGAGCTTGAAAGATTAGGTTTTTCACTGCCTTTACGTCTAAGAGGAGGGGGTGAGAGCTCTCTTAGCACCGGTACCTCTGGTTGGGGCAGTCCTCCTTCGCAACAGGCCAGTAATAATAATGCAAATAATACAACTGGATGGGGCTCCGCAAATACTACCAACTCAAATAGTACCGGCACTCTACAATGGGGCAATAGTAATCGCACCCCAACATCAGGACCTGGATCACAACCTTCAGATGTGTGTATTTTAGGAAGTAAGTCTATaccaaatatgcaacaaaacgGGCAACAACCACCGACGTCACAACCGAATAATGCTGGATGGGGACAACCTGGAAGCAAACCCTCTGGTACGGCAGTTAGCAATACAAATAATACTACAGGTACATCTCAATCAAGTGGTGCGAATTCTACTATAGCTACAAATTCAACCAAACAACAGCTTGAGCAGTTAAACAATATGAGGGAAGCTATTTTTAGTCATGATGGATGGGGCGGCcatATTAATCAAGACACAAACTGGGATATTCCTGGTAGTCCTGAACCACTGCTTAAGGTAGATGGAACTACAGCACCACCATGGAAACCAAATGTCAACAATGGAACTGAATTGTGGGAAGCCAATTTACGTAATGGTGGACAGCCACCCCCGCAGCCTCAACAAAAACCATGGGGGCATACTCCTGCTACAAACATCGGAGGCACTTGGGGTGAAGATGATGATGTTGCCGATAGTTCAAATGTATGGACTGGGGTACCTGCTACACAACAACAGTGGGGTAACAATGCCGGTACAGGAGCTGGTGCTGGAACTGGAGCTGGAGGAACAATGTGGGgagcTCCAAAAAAAGAAACCGAATGGGCTGCTGCTAGTGCAACTGGTTGGGGTGATCCACGTTCTGGAGATCCTCGTGCTGGAAGCATGGATCCAAGAGAAATGAGACCAGATTTAAGGGACATGCGAACTAACACTTCTGATCCAATGCGAATGTTGGATCCACGAGAACAAATGCGTTTGACTGGCGGTGACATGCGAGGTGATCCTAGAGGCATAACAGGACGTCTAAATGGTGTTGGGGCAGAAACATTTTGGGCTCAACCGACTCCTCCAACCTCATCTCATCATATGCATCATCAACCAAAAATTCCTATGGGACCTGGAGGCAATACTGCTGGGTGGGAAGAACCTTCACCTCCAACACAAAGACGCACAATGCCCAATTATGATGATGGAACATCTTTGTGGGGAAATCCCCAGCAAGgcTCACATTGGAAAGATCTTCCCACTGCTGCAAACATGGCAAGAAGTGGAGCAGGTGGACCACCAGGAATGCAACAGGCCCGTTTAAAACCAGATGGTGCTGTTTGGAGTCATGGACGCAATGGGTCTTGGGATGAAACCGGACCTGCATGGGATGATGGATCTGTACCATGGGGTAAACAGAAACCTATGGTTGCTCCATTAtgggaaaatgaaattgattggAATCATAAACCAGGACCAAAGCCTCCACTTACGAAAGAAATGGTTTGGAATTCTAAACAATTTCGTGTACTCGTTGACATGGgatataaaAAAGAAGATGTTGAAAATGCGTTAAGGTTGAGGGAGATGAACATGGAAGATGCGTTAGATATGCTAAGTGCTGTACGTGGTCCTAGTATTGATAGTTGGCGAACCCGCCATGAAGATCACTATGATCATCAAGGATCTGGTCAATTTCCTGGTCGTTTTCCTACAGGTCCATCTGGCCAGATGCCTTTTCCTCCTGGAAACAATGGaccaaatttgttaaataatatgGGTAGTGCCTCAACTggtacaaataattgcttaattAATAATATGCAAAAAATGTTAGCTCAAACTGGAGGATCTCAAGGTTTTGCTAGCACATCAGGTCGCCCTGTTGCACCTCAAACAACACCATCTTCTCAACAATTAAGAATGCTCGTTCAGCAAATACAAATGGCTGTACAGGCTGGTTACTTGAATCATCAGATATTAAATCAACCACTTGCTCCACAAACATTGGTTCTTCTTAACCAGCTAttgcaacaaattaaaaacttgcAGCAGCTACTAAATCAACAGTCAGTAGCTCAAACTCAAACTCTGGGcggaaaacaaaacaatatattaCTTCAGTGTTCAGTGCTCATTACCAAAACAAAGCAACAAATTACTAATTTACAGaATCAAATAGCAGCTCAACAGGCAATTTATGTAAAACAACAGCAGCATTTAGCAGCAAATTTGGCTGGTCAATCTGACATTTTTAAGACAAACGCTATGCACGATTCAATCAATGCTTTGCAAGGCAACTTTGTTGATTTGAGTATCAAGGATTCTTctcaaattAGCCAGCAACAGTCTAGGTTAAATCAATGGAAATTACCTGCTTTAGATAAAGAAGAAGTTGGAGATTTTAGCAGAGCACCTGGATCAATATCAAAACCTTTAGCACCTACAAATAATTCGCCAAATTTGAATCCTTTAGGTCTTACTCAACCAGATGGccCTTGGTCAAGTGGCCGTTCCACAGATACTGGAGGTTGGCCTGATACTGGCACAAATGACACTGGCGTTCCAGATAATAAAGATGGACAATGGTCAACTCCTACTCAACCATCACTTACTGATTTAGTACCTGAATTTGAACCGGGAAAACCTTGGAAAGGTAACCAAATGAAATCTATTGAAGATGATCCTAGTATTACTCCTGGTTCAGTAGTTCGTTCTCCTCTCTCTATTGCCACTATTAAAGATACTGAATTGTTTACAATGAATTCGAGCAAGAATTCCCCGCCTGGTGGAGATACTATACAGCCTCTTAGTCTTAGCTCATCAACTTGGAGTTTTAATCCACCAGCAACTACTCCCAGTGCGTTTACTAGTCCTCAGAATAAGATACCTAATAACAAAGGAACTTTAGGTGAtcttaacacatcaactgcagTTACTTCTGAATTGTGGGGTGCACCTAAATCACGTGGACCACCTCCAGGTCTCGCAACTAAGGGTACATCATCACTTAATGGATGGACTATCAATTTAGGCTCCTCATCATGGGGTGTGCCACGTGGTTCTGGAAATTGGGGATCTTCACCCTGGTTGCTACTTCGAAATTTGACAGCGCAGATTGATGGATCAACACTTCGCACATTGTGTATGCAACATGGTCCACTTCAGTGTTTCCATTTGTACTTGCATCAAGGATTTGCTCTTGCAAAATATTCAACACGTGAAGAAGCTACAAAGgcACAAACCGCTTTAAATAATTGCGTTTTGGGTAATACAACTATCTTAGCAGAAAATCCATCTGATTGGGATGCTCATACTTTGTTACAACAAGTTGCTTCCCAAGGTGGTTCCTCTGGAGGTTGGCGAAACAGTTCAAAGCAGCAAAGTACAGGCGCTGACACTTGGAGTACTGGTTGGCCAAATAACCCATCAACAGCCAGTTTGTGGGGTTCGGGTGCATTAGACACGTCTGATCAGTCAAGAGCAACACCGTCAAGTCTAAATTCATTCCTTCCAGGGGACCTGTTGGGTAGCGgtgatgaatataaatgtaaggaatgcgagtataaaacagtgcagaaaTATAAGCTAAAACTTCATATGggtgaagaatataaatgtaaggaatgcaattataaaacagtgtggaaatatGATTTACAAGGTCATATGAAAAATCATatgggtgatgaatataaatgtgagGAGATGAAAACGGGTAAAccaacaattgtaaaaataaattttaggttATTCATGGATGTGGATATGAAAGAAAGCTGCTCGATTAAATCAGAAGTTTTTGAGGAAACTTTTTCCTTTAGTGAAAAATATGAGGAGTATGACAATAAGGAATTGAAAACTGAGCCTGTAGGTACGGAAGAATCATTTAAATGTCGGGACGAAGATGCCCCTGCAGAGCATATCAATGTATCTCCTGTTGCCGTACCACAATATGCTGGTAATGAAAGTAATGTCCAGATGACGAAGAAAGACTTCTTGGtggaacatttaaaaagttctaaaaatattaaatgtttttataaggGATATAACTTTAAAACCTCACAATATTTGAAGATTCATAACAATCTAGGTGATAGATGTATTGGTACagattgtaatttaaatacatcGTGGATTTTACCGTCAGTATCACAGTTGAAAACTTCAGGAAGTAGTGATGAAAATCTTTATGATACGTGTAATAACATTGGGTGCGAACCTTATctaaagaaatctacaaaaattccTAAATATAATCACTCTAAGTGTAACgactgtgattataaaacacaatggaaaaagAATCTAAAAAGACACGCGAAAATTCATAttggtgaaaaatataaatgcagCGAATGCGGGTATAAAACATTACGAAAATACGATCTAAGAGCTCATACcaaaattcacacaggcgatgaatataaatgtaaggagtGTGAGTATAAAACACcgtggaaacagaatctaaaaaCTCATATGCAAATTCATATGGGtaatgaaatgaaatgtacggaatgtgagtataaaacagtgtggaggCATCTATTAAAAgttcatatgaaaattcatatgggggatgaatataaatgtaatgaatgcgaatataaaacagtgtggaaatgtGATCTAAAAGTTCATATGAAACTTCATATGcgtgaaaaatataaatgtaaggaagatTTGTATAAAACAGTGGGCAAACGTAATCTAAATGATCATATGAAAATTGATACTCAGGAAAAATATgattgtaaagaatgtgactataaaacattaCGAAAACATGATCTAAAAgctcatatgaaaattcatacaggcgatgaatataaatgtacggtatgtgagtataaaacagcgtggaaacaaaatctaaaaactcATATGCGAATTCATATGGGCGATGaacataaatgtaaacaatgtgaatataaaactttacaaaaacatGATTTAGAAGCTCACATGAAACTTCATACGGATAAAAAAGATGAATGTAAGGACGATTCGTATAAAACAGTGTGCACACATTATGTAAAGgctcatatgaaaattcatactcgAGAAAAATATGAATGTAAAGAATGTCAGTATAAAACATTAAGAAAACATGATCTAAAAgctcatatgaaaattcatacaggcgatgaatataaatgtaaggaatgtgaatataaaacagcatggaaacagaatttaaaaactCATATGCGAATTCATATGGGTGAAGAACATAAATGtacggaatgtgattataaaacagtgtggaagcATCTTTTAAAAGTTCATATGAAAGTTCATATGggagatgaatataaatgttatgaatgtgattataaaacagtttggaaatATCATCTAAAAACTCATTTGAAAAATCATatgggtgatgaatataaatgtaaagaatgtgagtataaaacaCTACAAAAACATGATCTAAAAGTTCATATGAAACttcatacaggtgaaaaatataaatttaaggaaGGTACGTATAAAACAGTGAGCAAACGTAATACCAGTGAAAAATatgaatgtaaagaatgtgcGTATAAAACATTACGAAAACATGATTTAAAAgctcatatgaaaattcatacaggcgatgaatataaatgtaaggaatgtgagtataaaacggcatggaaacagaatttaaaaactCATATGCAAATTCATATGGGTGAAGAACGTAAATGTACAGAATGCgagtataaaacagtgtggaagcATCTTTTAAAAGCTCATATGAAAGTTCATACAGgggatgaatataaatgtaatgaatgcgagtataaaacagtgcagaaaaGTCGTTTAAAAacgcatatgaaaattcataaaattgtgaTTAAAACGCTGAATATGGAAGAAAGTAATTCTAATGCATATtatagataa
Protein Sequence
MRDPTPSEPKFTFPTYQVPQASAMRGRAPPVQVARAAGEDRAYLPSQPCASPGVYSVIIGSSCPLAGNSNLRMQSVTENCLLNSVTVPKIQRNDHTTVAHNNSDKLECKFGALHLFGQDIPNQKSDNLEGDLIKLNLTKIKSSSTHCNSNITDDNYSLDRLVKLSQRTRELERLGFSLPLRLRGGGESSLSTGTSGWGSPPSQQASNNNANNTTGWGSANTTNSNSTGTLQWGNSNRTPTSGPGSQPSDVCILGSKSIPNMQQNGQQPPTSQPNNAGWGQPGSKPSGTAVSNTNNTTGTSQSSGANSTIATNSTKQQLEQLNNMREAIFSHDGWGGHINQDTNWDIPGSPEPLLKVDGTTAPPWKPNVNNGTELWEANLRNGGQPPPQPQQKPWGHTPATNIGGTWGEDDDVADSSNVWTGVPATQQQWGNNAGTGAGAGTGAGGTMWGAPKKETEWAAASATGWGDPRSGDPRAGSMDPREMRPDLRDMRTNTSDPMRMLDPREQMRLTGGDMRGDPRGITGRLNGVGAETFWAQPTPPTSSHHMHHQPKIPMGPGGNTAGWEEPSPPTQRRTMPNYDDGTSLWGNPQQGSHWKDLPTAANMARSGAGGPPGMQQARLKPDGAVWSHGRNGSWDETGPAWDDGSVPWGKQKPMVAPLWENEIDWNHKPGPKPPLTKEMVWNSKQFRVLVDMGYKKEDVENALRLREMNMEDALDMLSAVRGPSIDSWRTRHEDHYDHQGSGQFPGRFPTGPSGQMPFPPGNNGPNLLNNMGSASTGTNNCLINNMQKMLAQTGGSQGFASTSGRPVAPQTTPSSQQLRMLVQQIQMAVQAGYLNHQILNQPLAPQTLVLLNQLLQQIKNLQQLLNQQSVAQTQTLGGKQNNILLQCSVLITKTKQQITNLQNQIAAQQAIYVKQQQHLAANLAGQSDIFKTNAMHDSINALQGNFVDLSIKDSSQISQQQSRLNQWKLPALDKEEVGDFSRAPGSISKPLAPTNNSPNLNPLGLTQPDGPWSSGRSTDTGGWPDTGTNDTGVPDNKDGQWSTPTQPSLTDLVPEFEPGKPWKGNQMKSIEDDPSITPGSVVRSPLSIATIKDTELFTMNSSKNSPPGGDTIQPLSLSSSTWSFNPPATTPSAFTSPQNKIPNNKGTLGDLNTSTAVTSELWGAPKSRGPPPGLATKGTSSLNGWTINLGSSSWGVPRGSGNWGSSPWLLLRNLTAQIDGSTLRTLCMQHGPLQCFHLYLHQGFALAKYSTREEATKAQTALNNCVLGNTTILAENPSDWDAHTLLQQVASQGGSSGGWRNSSKQQSTGADTWSTGWPNNPSTASLWGSGALDTSDQSRATPSSLNSFLPGDLLGSGDEYKCKECEYKTVQKYKLKLHMGEEYKCKECNYKTVWKYDLQGHMKNHMGDEYKCEEMKTGKPTIVKINFRLFMDVDMKESCSIKSEVFEETFSFSEKYEEYDNKELKTEPVGTEESFKCRDEDAPAEHINVSPVAVPQYAGNESNVQMTKKDFLVEHLKSSKNIKCFYKGYNFKTSQYLKIHNNLGDRCIGTDCNLNTSWILPSVSQLKTSGSSDENLYDTCNNIGCEPYLKKSTKIPKYNHSKCNDCDYKTQWKKNLKRHAKIHIGEKYKCSECGYKTLRKYDLRAHTKIHTGDEYKCKECEYKTPWKQNLKTHMQIHMGNEMKCTECEYKTVWRHLLKVHMKIHMGDEYKCNECEYKTVWKCDLKVHMKLHMREKYKCKEDLYKTVGKRNLNDHMKIDTQEKYDCKECDYKTLRKHDLKAHMKIHTGDEYKCTVCEYKTAWKQNLKTHMRIHMGDEHKCKQCEYKTLQKHDLEAHMKLHTDKKDECKDDSYKTVCTHYVKAHMKIHTREKYECKECQYKTLRKHDLKAHMKIHTGDEYKCKECEYKTAWKQNLKTHMRIHMGEEHKCTECDYKTVWKHLLKVHMKVHMGDEYKCYECDYKTVWKYHLKTHLKNHMGDEYKCKECEYKTLQKHDLKVHMKLHTGEKYKFKEGTYKTVSKRNTSEKYECKECAYKTLRKHDLKAHMKIHTGDEYKCKECEYKTAWKQNLKTHMQIHMGEERKCTECEYKTVWKHLLKAHMKVHTGDEYKCNECEYKTVQKSRLKTHMKIHKIVIKTLNMEESNSNAYYR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-