Lyun018320.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002464.1:779398-780848[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.8 1.4e+02 3.4 0.1 1 21 60 81 60 82 0.79 2 12 2.1 30 5.5 0.8 1 23 116 138 116 138 0.94 3 12 0.07 0.98 10.1 0.8 1 17 143 159 143 160 0.95 4 12 0.00081 0.011 16.2 2.1 1 23 197 219 197 219 0.99 5 12 0.0059 0.083 13.5 1.8 1 23 224 246 224 246 0.99 6 12 0.18 2.6 8.8 1.0 1 23 251 273 251 273 0.97 7 12 5.5e-05 0.00078 19.9 3.1 1 23 278 300 278 300 0.99 8 12 0.00056 0.0079 16.7 3.8 1 23 305 327 305 327 0.99 9 12 0.025 0.36 11.5 0.8 1 23 332 354 332 354 0.98 10 12 0.0069 0.097 13.3 1.0 1 23 359 381 359 381 0.98 11 12 0.0061 0.086 13.4 0.8 1 23 386 408 386 408 0.98 12 12 0.00034 0.0048 17.4 1.6 1 23 413 435 413 435 0.99
Sequence Information
- Coding Sequence
- atggatgTTGATTCCATTGAAAGTGTTATAATTAAATCTGAAGTGAATATAACTGAAACCTTTTCGTTTTGTGGAGAACACAGAGGTTGTGAGAATGTAGAATTGAAAACTGAGCcggtaaattatataaaatcgtTTAAATTTAAGGAAGAAGATGATCCTGCTCCAATGCAACTATATTCCTGTAAtgagtgtaataattttatgacaAGGGAAGaagattctctaatagaacatttgaaaattactaaaaatgttgaatactttgataaggaatgtaactttaaatCCTGGTTGGATTGTTCCATAAACGAACAGGTGAAGACTTCAAGTAGTGGTGGCCagtatatttgtaatgaatgtaattctaccacattagtaaaaaattatctGAAAAGCCATGTGAaacttcatacaggtgatacatataggtgtaaagaatgcgattataaaacagcacgGAAAGATTATCTAAAAGAAcctgtcaaaattcatacagatgatgaatataagtgtaaaaaatctgattataaaacagtgcagaaaTATTGTCAaatgaaacatgtcaaaattcatacacctgaacaatataagtgtaaagtcTGTGATTATAAGACAACACGGAAAAATCGTCTAaatgaacatgtcaaaattcatacaggtgatgaatataaatgtaaacaatgtgattataaaacagtgtggaaaaatagtctaacaaaacatattaaaattcatacagacgatgaatataaatgtaaggaatgcaattataaaacaatatggaaaggtcgtctaaaggaacacgtcaaaatccatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgcggaaagatCATCtgaaagaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcagaaaTATTGTCTAataaaacatgtgaaaattcacacaggtgatgaatataagtgtaaagtatgtgattataaaacagtgtggaaaaatagtctaaaggaacatgtgaaagttcatacaggtgatgaatataaatgtaaagaatgtgattataaaacggtgtggaaaaataatctgaaggatcatgtcaaaattcacacaggcgatgaatataaatgtaatgaatgtgattataaaacagtgtggaaaaataatctgaaggatcatgtcaaaattcacactggtgatgaatataagtgtaaagaatgtgattataaaacagtgcggaaagatCGTTTAAAGGaccacgtcaaaattcatacaagtgatgTAAATGAACgtgaggaatgtgattataaaacagtgtggaaaaaaggtctaaagaaacattttgaaattCATACTGGCAAGTGA
- Protein Sequence
- MDVDSIESVIIKSEVNITETFSFCGEHRGCENVELKTEPVNYIKSFKFKEEDDPAPMQLYSCNECNNFMTREEDSLIEHLKITKNVEYFDKECNFKSWLDCSINEQVKTSSSGGQYICNECNSTTLVKNYLKSHVKLHTGDTYRCKECDYKTARKDYLKEPVKIHTDDEYKCKKSDYKTVQKYCQMKHVKIHTPEQYKCKVCDYKTTRKNRLNEHVKIHTGDEYKCKQCDYKTVWKNSLTKHIKIHTDDEYKCKECNYKTIWKGRLKEHVKIHTGDEYKCKECDYKTVRKDHLKEHVKIHTGDEYKCKECDYKTVQKYCLIKHVKIHTGDEYKCKVCDYKTVWKNSLKEHVKVHTGDEYKCKECDYKTVWKNNLKDHVKIHTGDEYKCNECDYKTVWKNNLKDHVKIHTGDEYKCKECDYKTVRKDRLKDHVKIHTSDVNEREECDYKTVWKKGLKKHFEIHTGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -