Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010001557.1:755150-758554[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.015 0.21 12.2 1.2 1 23 174 196 174 196 0.98

2 14 0.00042 0.006 17.1 1.6 1 23 201 223 201 223 0.98

3 14 0.81 11 6.8 2.1 1 23 228 250 228 250 0.98

4 14 0.23 3.3 8.5 3.3 1 23 255 277 255 277 0.98

5 14 6e-05 0.00085 19.8 1.6 1 23 282 304 282 304 0.99

6 14 0.0041 0.058 14.0 1.1 1 23 309 331 309 331 0.98

7 14 0.0012 0.017 15.7 4.3 1 23 336 358 336 358 0.99

8 14 0.63 8.9 7.1 3.9 1 23 363 385 363 385 0.98

9 14 1.8 25 5.7 3.4 1 18 390 407 390 407 0.92

10 14 0.0022 0.031 14.8 3.5 1 23 443 465 443 465 0.98

11 14 0.35 4.9 7.9 2.5 1 23 470 492 470 492 0.98

12 14 0.001 0.015 15.9 3.2 1 23 497 519 497 519 0.99

13 14 0.23 3.3 8.5 2.8 1 23 524 546 524 546 0.98

14 14 7e-05 0.001 19.5 1.3 1 23 551 573 551 573 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.015	0.21	12.2	1.2	1	23	174	196	174	196	0.98
2	14	0.00042	0.006	17.1	1.6	1	23	201	223	201	223	0.98
3	14	0.81	11	6.8	2.1	1	23	228	250	228	250	0.98
4	14	0.23	3.3	8.5	3.3	1	23	255	277	255	277	0.98
5	14	6e-05	0.00085	19.8	1.6	1	23	282	304	282	304	0.99
6	14	0.0041	0.058	14.0	1.1	1	23	309	331	309	331	0.98
7	14	0.0012	0.017	15.7	4.3	1	23	336	358	336	358	0.99
8	14	0.63	8.9	7.1	3.9	1	23	363	385	363	385	0.98
9	14	1.8	25	5.7	3.4	1	18	390	407	390	407	0.92
10	14	0.0022	0.031	14.8	3.5	1	23	443	465	443	465	0.98
11	14	0.35	4.9	7.9	2.5	1	23	470	492	470	492	0.98
12	14	0.001	0.015	15.9	3.2	1	23	497	519	497	519	0.99
13	14	0.23	3.3	8.5	2.8	1	23	524	546	524	546	0.98
14	14	7e-05	0.001	19.5	1.3	1	23	551	573	551	573	0.99

Sequence Information

Coding Sequence: ATGGACGAAGTAGTTGTAATGTTGTACATACTTTTAGAAGAAGATAAGGCAAGtttatcatATACAATGGATATGGACTCGGTCGACTTTAATGaaagttgtgcaataaaatcagaagtgattttaacagagacattttctttttgtgggaagTACGAAGattGCGGTAGTAAGGAACTGACATTGGAGTCTGTAGATTACGACGAATCGTTTAAacctaaagaagaaaatgatctgGCAGAACCCATGGATACACATGCTGCTCTGATACAACGAGATTTTTGTAATGAgtctaattttataacaattggaGAAAATTGTCTAATAGAAGTTTCTAAAGTGACTAAAAGCGTTAAATACtcttgtaaggaatgtaactttacaacccAGTTAGAATGTTCTATAAAAGAGCATAAGAGAATTCACAATGATGGATATAATATCgaagaatgtaattttgagaCGCCAGAGATTATCTCTCTAACACCACACTTGAAAACTCCAAGAAGTGGAAATGAAtatgtttgtaatgaatgtaattacaccacattgAAAAAAAGCGATATAAAGACACACATGAAGATTCACAAAAGTGTTGCATATAGTTgtgaaaaatgtgattataaagcagCAAGGAAAGATCATTTAAAGCAACATGTTAatattcatactggtgaagaatataagtgtaaagagtgtgcttttaaaactatatggaaatgtaatctaataacacatatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtatggaaaaagtgtctaaaggaacatgttaaaattcatactggtcataaatataagtgtaaagaatgtgattttaaaactgtacagaaaagtgatctaaagcaacatgtcaaaattcatgttGGCAATAAGTATAAGTGTGtggaatgtgattacaaaacagtacggaaaaatcgtctaaaggaacatgtcaaaattcatacaggtgatgagtataagtgtaaagaatgtgattataaaacagtacgaaaatattgtctaaaggaacatgttaaaattcatactggcgatgagtataagtgtaaacaatgtgattataaaacagtttggaaaaaGTGTCTcaaggaacatgttaaaattcatactggtaatgaatgtaagtgtaaagaatgtgattttaaaactgtacagaaaagtGATCTAAAGCATGTCCACATTCCTACTGGTCATATGTATAAGTGtatagaatgtaattataaaactgtatggaaaaatcGTCTAAAAGAAcacgttaaaattcatacaggtgaggagtatatgtgtaaagaatgtgattataaaacagtacgaaaatattgtctaaaggaacatgttaaaattcatacaggtcaCAAATATAATTGCAAagattgtgattttaaaacagtatggaaaaattgtctaaaggcacatcttaaaattcatacaggtgacaaatataagtgtaaagaatgtgattatgaaacagtgcgaaaatattgtctaaaggaacatgtaaaaattcacactggtgatgaatataaatgtaaagaatgtgattataaaacagtatggcaaaggtgtctaaaggaacatgtcaaaattcatactggtgatcaatataagtgtaaagaatgtgattttaaaactgtaaggaaaagtgatctaatgcaacatgtcaaaattcatacaagtgtcTAG
Protein Sequence: MDEVVVMLYILLEEDKASLSYTMDMDSVDFNESCAIKSEVILTETFSFCGKYEDCGSKELTLESVDYDESFKPKEENDLAEPMDTHAALIQRDFCNESNFITIGENCLIEVSKVTKSVKYSCKECNFTTQLECSIKEHKRIHNDGYNIEECNFETPEIISLTPHLKTPRSGNEYVCNECNYTTLKKSDIKTHMKIHKSVAYSCEKCDYKAARKDHLKQHVNIHTGEEYKCKECAFKTIWKCNLITHIKIHTGDEYKCKECDYKTVWKKCLKEHVKIHTGHKYKCKECDFKTVQKSDLKQHVKIHVGNKYKCVECDYKTVRKNRLKEHVKIHTGDEYKCKECDYKTVRKYCLKEHVKIHTGDEYKCKQCDYKTVWKKCLKEHVKIHTGNECKCKECDFKTVQKSDLKHVHIPTGHMYKCIECNYKTVWKNRLKEHVKIHTGEEYMCKECDYKTVRKYCLKEHVKIHTGHKYNCKDCDFKTVWKNCLKAHLKIHTGDKYKCKECDYETVRKYCLKEHVKIHTGDEYKCKECDYKTVWQRCLKEHVKIHTGDQYKCKECDFKTVRKSDLMQHVKIHTSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -