Lyun002729.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010000391.1:1024544-1050799[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.042 0.59 10.8 0.1 1 21 468 488 468 489 0.95 2 20 0.024 0.34 11.6 1.2 1 23 552 574 552 574 0.97 3 20 2.1e-05 0.0003 21.2 1.0 1 23 579 601 579 601 0.99 4 20 0.00058 0.0083 16.7 1.7 1 23 606 628 606 628 0.98 5 20 2 28 5.5 5.7 1 23 633 655 633 655 0.98 6 20 0.24 3.4 8.4 5.3 1 23 660 682 660 682 0.98 7 20 0.0025 0.036 14.7 2.0 1 23 687 709 687 709 0.98 8 20 2.7 38 5.1 0.5 1 23 714 736 714 736 0.83 9 20 0.021 0.3 11.7 4.7 1 23 741 763 741 763 0.98 10 20 0.19 2.7 8.7 1.6 1 23 768 790 768 790 0.98 11 20 8.2 1.2e+02 3.6 0.5 1 19 795 813 795 817 0.69 12 20 1.2 16 6.3 5.2 1 23 822 844 822 844 0.98 13 20 1.7 24 5.7 0.7 1 23 849 871 849 871 0.96 14 20 1 14 6.5 2.4 1 23 876 898 876 898 0.95 15 20 3.8 54 4.7 0.4 1 23 903 925 903 925 0.79 16 20 0.16 2.3 9.0 5.1 1 23 930 952 930 952 0.99 17 20 2 29 5.5 2.5 1 23 957 979 957 979 0.95 18 20 0.21 3 8.6 1.9 1 23 984 1006 984 1006 0.98 19 20 2.4e-06 3.4e-05 24.2 2.0 1 23 1011 1033 1011 1033 0.99 20 20 0.018 0.26 11.9 1.1 1 23 1038 1060 1038 1060 0.98
Sequence Information
- Coding Sequence
- atgttgaCCATCCCACAATATGAGCATGGTATTAATGACTTAGAAGAATTGGCTGGGTCTGACCTTCCCATATTAATTGATAAGTATGATATGCAACTATTTCAAGCTAAAATGCCGAATAGCTCATTGTATACCAAGGTGACGGATAaatttcatttagtttctttctaTGAATGTATTGATGCTATACTAAACCAAACGGCATTAGAAcacaattctgtttttattatatttgatatGTTATATGAATTAGTCCAAAACAGCAAACCAAAATTGCATATAATTGTAGACAGTGAATTGATAGGGGTGGAACAGCGcacatatttaacaaaaaatgagtCTCCTTTTTTGCATATTCTGAATGACATTGTAAGCACTTTCTTAGAGTCtggtttgataaatttaaagcaAATGGAGTATAAAAGATATATAAGTAAATTCGCACATCATTACGATAATAAACTAAATACGACAGAAGGGAATGTGGTCCTTAGCTTAAATCATGTGTATcctgtatttgttttctggGTCCTTATCATGAGTCTACAAGCAATTGTAGATGAAAATAAACAAGTCATATTCGATGATAATGGCAACATTTTCGTTTACAACAGCCTTAATAATTGCGCGACCTACATGGAAGATACAGCTGAGAACAGAAATCTGTTGAACATGCCATTACAAAATGATGAAATGATTGGACAGGGCAGTAATGCTAACTGCTctGCGGATAAAACCAAAGATGACGGCCCGAGGTGGACACacgacaaaattttgttactattttctttgtatcaagataatattaatttatttaaatttgctaaaaaaaccAATAGATCTATATGGAATGGCATTGCTGAATGTATGGCTAAAAAAGGCTACATGTTCACAGGCGTTCAGTGCGATATTAAATTCCGAAACCTCAAAAAAACCTATAAAAGAATTATAGATAAGAATAAGGGAACTGGCAACGGAGCCATATCCTGGccttattttgatttatttgacaGTTTATTTGGCAAATCAGCTGATACTGTGCCAATTGCTACAGCTAGCAACACCGATGGGTATTTATCAAGGTGTTCAACTCCAGGAACACCAGATACATCGGTGgaTTCAGGCGAGCTCATTGAAAAGCCGTCCACTTCAGATCGCAGTATACGGAAAAGAAGGCGCCTACCTCCTGATGAAGAACCACACTGGGTGAATTATAATGACTGTTGTCCAATAAAATCGGAAGTAATCGTAGAGGAATCATTTTCGTTTTGTGAGAAACATGAAGattatgaGAATGAAGAATTGAAAACTGAGCCAGTAAATTCGAAAGAATCTTTCATATGCGAAGGAGATCATTTGGCAGAGTACAACATGAATGTACACGCTGTGCCAGTACATCAATATATTTGTAAAGAGTGTAATTTTATGACAACAGAGAaagattctctaatagaacatttgaaaattactgctaacaatgttcaatatttttgtaaggagtGCGACTTTAAAACCATGATGGAATGTTCGATAAAACAACATTTGAGGGTTCACAACAGAATGACTGgtacatatatatttaaaaaatataaagttaagGTACCACTAATTCCCCCTTTACCACTACAATTGGAAACTCCAGAAGATAatgaatatatttgtaataaatgtgattataaaacacgatGGAAGCAGAATCTAAAGAGACATGTAGAAATTCACACTGGCAGAGAATATAAGTgcaatgaatgtgactataaaacagcgAGAAAGGATAATCTAAaccaacatgtaaaaattcacacaggtattgaatataagtgtaataaatgtgattataaaacaccgcGGAAGCGGCTTTTAAAAGCACATGAGAAAATTCACTCAGgtgttaaatataaatgtaatgaatgtgattataagacacCATGGAAACATTGTTTTCagaaacatgtgaaaattcactcccgtgatgaatataagtgtaatgaatgtgattataaaacaatatgtaaACCGCATCTAAAGAAACACGTGAAAATTCACGCTGGCGATGAATATAactgtaatgaatgtgattataaaacaccacgtAAGCGGCTTTTAAAATCACATAAGAAAATTCACTCAGAtgttaaatataagtgtaatgagtgtgattataaaacactgtggaagCAGCTCTTAAAAGCACATGgaagaattcatactggtgatgaatataagtgtaacaaatgtaattataaaacattgcacAAAGCTAATTTACAAGCACATACTAaaactcatacaggtgatgaatataagtgtaaagaatgtgcctataaaacaatatggaaaccgCATCTAAGGgagcatatgaaaattcacactggtgatgaatttaagtgtaatgaatgtgattataaaacaccatggaaacggATTTTAAATGAACACGAGAAAATTCATTCTGGtgttaaatataagtgtaatcaatgtgattttaaaacaacatgGAAACAGTGTTTGaagaaacatgtaaaaattcacactggaaataaatataagtgtcgTAAATGTAACTATGAAACACTACAGATAGCTAATTTGCAGGTACATagtaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacactatggaaatcccatctaaaggaacatgtgaacaTTCACACTGGtggtgaatataagtgtaatgaatgtgattataaaacactgtggaaagGGCTTCTACAAGCACATagtaaaattcatacaggtgatgaatataagtgtaaagaatgtgattatagaacaccatggaaacattgtttaaaggaacatatgaaaattcacacaggtgatgaatacaagtgtaaggaatgtgattataaaacacagtggaAATGGTGTTTAAatgaacatgtgaaaattcatactggtgatgagtataagtgcaatgaatgtaattataagacAATATGGAAATATACTTTAAAAGAACATGAGAAAAGtcatagtggtgatgaatataagtgtactgaatgtgactataaaacagcgAGGAgaagtaatttaaagaaacatatgAATATTCACattggtgataaatataagtgcaatgaatgtgattataaaacatcatggaAACGTCTTTTAAAAGCACATCAGACAATCCACACAGGTTTTGAATATAAGTGA
- Protein Sequence
- MLTIPQYEHGINDLEELAGSDLPILIDKYDMQLFQAKMPNSSLYTKVTDKFHLVSFYECIDAILNQTALEHNSVFIIFDMLYELVQNSKPKLHIIVDSELIGVEQRTYLTKNESPFLHILNDIVSTFLESGLINLKQMEYKRYISKFAHHYDNKLNTTEGNVVLSLNHVYPVFVFWVLIMSLQAIVDENKQVIFDDNGNIFVYNSLNNCATYMEDTAENRNLLNMPLQNDEMIGQGSNANCSADKTKDDGPRWTHDKILLLFSLYQDNINLFKFAKKTNRSIWNGIAECMAKKGYMFTGVQCDIKFRNLKKTYKRIIDKNKGTGNGAISWPYFDLFDSLFGKSADTVPIATASNTDGYLSRCSTPGTPDTSVDSGELIEKPSTSDRSIRKRRRLPPDEEPHWVNYNDCCPIKSEVIVEESFSFCEKHEDYENEELKTEPVNSKESFICEGDHLAEYNMNVHAVPVHQYICKECNFMTTEKDSLIEHLKITANNVQYFCKECDFKTMMECSIKQHLRVHNRMTGTYIFKKYKVKVPLIPPLPLQLETPEDNEYICNKCDYKTRWKQNLKRHVEIHTGREYKCNECDYKTARKDNLNQHVKIHTGIEYKCNKCDYKTPRKRLLKAHEKIHSGVKYKCNECDYKTPWKHCFQKHVKIHSRDEYKCNECDYKTICKPHLKKHVKIHAGDEYNCNECDYKTPRKRLLKSHKKIHSDVKYKCNECDYKTLWKQLLKAHGRIHTGDEYKCNKCNYKTLHKANLQAHTKTHTGDEYKCKECAYKTIWKPHLREHMKIHTGDEFKCNECDYKTPWKRILNEHEKIHSGVKYKCNQCDFKTTWKQCLKKHVKIHTGNKYKCRKCNYETLQIANLQVHSKIHTGDEYKCKECDYKTLWKSHLKEHVNIHTGGEYKCNECDYKTLWKGLLQAHSKIHTGDEYKCKECDYRTPWKHCLKEHMKIHTGDEYKCKECDYKTQWKWCLNEHVKIHTGDEYKCNECNYKTIWKYTLKEHEKSHSGDEYKCTECDYKTARRSNLKKHMNIHIGDKYKCNECDYKTSWKRLLKAHQTIHTGFEYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -