Lyun016134.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002227.1:47511-49513[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.33 4.7 8.0 0.9 1 23 94 116 94 116 0.98
2 17 0.44 6.2 7.6 2.9 1 23 121 143 121 143 0.98
3 17 0.067 0.95 10.2 2.9 1 23 148 170 148 170 0.99
4 17 0.2 2.8 8.7 3.1 1 23 175 197 175 197 0.98
5 17 0.0078 0.11 13.1 1.0 1 23 256 278 256 278 0.98
6 17 0.098 1.4 9.7 3.3 1 23 283 305 283 305 0.99
7 17 0.00053 0.0074 16.8 1.0 1 23 310 332 310 332 0.98
8 17 0.13 1.9 9.3 2.8 1 23 337 359 337 359 0.98
9 17 0.0027 0.038 14.6 1.3 1 23 364 386 364 386 0.98
10 17 0.17 2.4 8.9 3.3 1 23 391 413 391 413 0.99
11 17 0.018 0.25 12.0 1.4 1 23 426 448 426 448 0.98
12 17 0.082 1.2 9.9 2.4 1 23 453 475 453 475 0.98
13 17 0.015 0.21 12.3 1.0 1 23 480 502 480 502 0.98
14 17 0.098 1.4 9.7 3.3 1 23 507 529 507 529 0.99
15 17 0.0078 0.11 13.1 1.0 1 23 534 556 534 556 0.98
16 17 2.5e-05 0.00035 21.0 1.8 1 23 561 583 561 583 0.99
17 17 0.074 1 10.0 2.9 1 23 588 610 588 610 0.99

Sequence Information

Coding Sequence
ATGGATATCGACTCGTTAgactttattgaaagttgtgctataaaatcagaagtgattttaacagagacattttctttttgcggAAAGTACGAAGatTGTGGGAGTAACCAACTGAAAACGGAGCCAGAAAATTACGAGGAATCGCCTAAACCTACAGAAGAAAATGATCTGGTAAAACTCAAAGATATACAGGCTGCTCTGATGCAACAAGATTTTTGTGATGACTCTAATTCTACAGCAATCAGAGAAACTCAAATAGAACTTactaaaaactttaaatacTCATGTAAGGGATGTAACTTTACAACCCAGTTAGATAGTTCTATAAAAGAGCATATGAAGATTCACAAAGGTACTTCATATAATTGcgagaaatgtgattataaaacagtatggaaaaattgtctaaaggaacatattaaaatgcatactggtgaagaatataagtgtaatgaatgtgattataaaacagtatggaaaaattgtctaaaggaacatattaaaatgcatactggtgaagaatataagtgtaatgaatgtgattataaaacaatatggagaAATTGTCTAAGGAAACATGTGAAGATTCACAAAGGTACTTCATATAATTGcgagaaatgtgattataatacacAGTGCCAAGGTCACTTCACAGCAGTTGcaaaaattcattctggtgatgaatataagtataaagaatgtgattataaaacagtatcgATAAATTCGCTACAGAAAcgtgtcaaaattcatactggtaatgaatataagtgtaaagagtgtgattataagacaatatggaaaaataatctaaacaatcatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatttggaaaaagtgtctaaaggaacatattaaaattcatactggtgaagaatataagtgtaaagcatgtgattataaaacgatacggaaaagtgatctaatgcaacatgtcaaaattcatactggtaataaatataagtgtaatgaatgtgattataaaacagtatggaaaaattgtctaaaggaacatctcaaaattcatactggtgaagaatataagtgtaatgaatgtgattataagacaacatggaaaaataatctaaacaatcatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatatggagaaattgtctaaaggaacatattaaaatgcatactggtgaagaatataagtgtaaagaatttgaagaatataagtgtaagcaatgtgattataaaacaatatggaaaaataatctaaacaatcatgtcaaaattcatactggtaataaatataagtgtaacgaatgtgattataaaacaatatggaaaaattgtctaaaggaacatatcaaaattcatactggtgaagaatataagtgtaatgaatgtgattataagacaatatggaaaaataatctaaacaatcatgtcaaacttcatacaggtgataaatataagtgtaaagaatgtgattataaaacaatatggaaaaagtgtctaaaggaacatattaaaattcatactggtgaagaatataagtgtaaagaatgtgattataaaacaatatggaaaaataatctaaacaatcatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacgagacagaaaagtgatctaatgcaacatgtcaaaattcatactggtaataaatataagtgtaatgaatgtgattataaaacaatatggaaaaagtgtctaaaggaacatattaaaattcatactggcgaaGAATATAACTAA
Protein Sequence
MDIDSLDFIESCAIKSEVILTETFSFCGKYEDCGSNQLKTEPENYEESPKPTEENDLVKLKDIQAALMQQDFCDDSNSTAIRETQIELTKNFKYSCKGCNFTTQLDSSIKEHMKIHKGTSYNCEKCDYKTVWKNCLKEHIKMHTGEEYKCNECDYKTVWKNCLKEHIKMHTGEEYKCNECDYKTIWRNCLRKHVKIHKGTSYNCEKCDYNTQCQGHFTAVAKIHSGDEYKYKECDYKTVSINSLQKRVKIHTGNEYKCKECDYKTIWKNNLNNHVKIHTGDEYKCKECDYKTIWKKCLKEHIKIHTGEEYKCKACDYKTIRKSDLMQHVKIHTGNKYKCNECDYKTVWKNCLKEHLKIHTGEEYKCNECDYKTTWKNNLNNHVKIHTGDEYKCKECDYKTIWRNCLKEHIKMHTGEEYKCKEFEEYKCKQCDYKTIWKNNLNNHVKIHTGNKYKCNECDYKTIWKNCLKEHIKIHTGEEYKCNECDYKTIWKNNLNNHVKLHTGDKYKCKECDYKTIWKKCLKEHIKIHTGEEYKCKECDYKTIWKNNLNNHVKIHTGDEYKCKECDYKTRQKSDLMQHVKIHTGNKYKCNECDYKTIWKKCLKEHIKIHTGEEYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00855090;
90% Identity
-
80% Identity
-