Lyun016021.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002214.1:1403-2799[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.5e-05 0.00036 20.9 2.3 1 23 107 129 107 129 0.99 2 12 0.031 0.44 11.2 2.2 1 23 134 156 134 156 0.98 3 12 0.043 0.61 10.8 2.4 1 23 161 183 161 183 0.99 4 12 0.0049 0.069 13.7 2.4 1 23 188 210 188 210 0.99 5 12 0.00067 0.0094 16.5 2.0 1 23 215 237 215 237 0.99 6 12 0.008 0.11 13.1 1.6 1 23 242 264 242 264 0.99 7 12 0.0026 0.036 14.6 0.5 1 23 269 291 269 291 0.98 8 12 0.014 0.2 12.3 1.7 1 23 296 318 296 318 0.97 9 12 0.014 0.19 12.3 1.0 1 23 323 345 323 345 0.98 10 12 5.7e-05 0.00081 19.8 1.9 1 23 350 372 350 372 0.99 11 12 0.0059 0.084 13.5 2.0 1 23 377 399 377 399 0.98 12 12 0.021 0.29 11.8 5.0 1 23 404 426 404 426 0.99
Sequence Information
- Coding Sequence
- ATGGATTTTACTTCTATTGAAAGTTGTACAATCAAATCggaaattattttaacagaaacattttgtgGAAACTATGAAGattgtggTAATGAAGAACTGAAAACGGAGCCAGTAGATTACAAAGAATTGTTTAATTCTAAGGAAGAAAATGATCCTGCAGAGCACATGGATATAGCTGCTGCCCGATTACAACAATCAAAGAgatttaaaactacaaaaaattttcaatatttttgtaagtactGTAACTTTAGAACTCATTTGGAATGTTTCataaaaaagcatttgaaaattcacactATTCATACAAAtaacgaatataagtgtaaagaatgtgattataaaacatcacagaaacgtaatctaaaggaacatgtcaaaattcatacaggtgacgaatataggTGCAACGAATGTGATTtcaaaacagtgtggaaacatagtctaaaggtacatctcaaaattcatacaggtgaggaatataagtgtcaagaatgtgattttaaaacagtgtggaaacatagtctaaaggttcatctcaaaattcatacaggtgagaaatataagtgtaaagaatgtgattataaaacaacgtggaaatattatctaaaggaacatctcaaaattcatacaaataaggaatataagtgtaaagaatgtgattataaaacagcgtggaaatataatctaaagaaacatctcaaaattcatacaggcgaggaatacaagtgcaaagaatgtgattataaaacagtgtggaaacataGTCTAGAGGagcacatcaaaattcatacaaatgatgaatataagtgtaaagattgtgattataaaacagcacggataaatcttctaaagggacacgttaaaattcataaaggtgacaaatatatgtgtaacgaatgtgattataaaacattgcggAAACGtactctaaaggaacatctcaaaattcatacaggtgatgaatataagtgtaaagagtgtgattataagacAGTGTGGAAAtatcttctaaaggaacatgtcaaaatccatacaggtgatgaatataagtgtaaagagtgtgattacaaaacagtgcggaaatatagtctaaaagaacatgtcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacattgcagaaatatagtctaaaggaacatgtcaaaattcatacacgtcaggagtataagtgtaaagaatgtgattataaaacggtgtggaaaaAACATCTGAAATCACATTTGAAAAGACATACAGATGATTTACATATCTGA
- Protein Sequence
- MDFTSIESCTIKSEIILTETFCGNYEDCGNEELKTEPVDYKELFNSKEENDPAEHMDIAAARLQQSKRFKTTKNFQYFCKYCNFRTHLECFIKKHLKIHTIHTNNEYKCKECDYKTSQKRNLKEHVKIHTGDEYRCNECDFKTVWKHSLKVHLKIHTGEEYKCQECDFKTVWKHSLKVHLKIHTGEKYKCKECDYKTTWKYYLKEHLKIHTNKEYKCKECDYKTAWKYNLKKHLKIHTGEEYKCKECDYKTVWKHSLEEHIKIHTNDEYKCKDCDYKTARINLLKGHVKIHKGDKYMCNECDYKTLRKRTLKEHLKIHTGDEYKCKECDYKTVWKYLLKEHVKIHTGDEYKCKECDYKTVRKYSLKEHVKIHTGEEYKCKECDYKTLQKYSLKEHVKIHTRQEYKCKECDYKTVWKKHLKSHLKRHTDDLHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -