Lyun015556.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002166.1:105632-107757[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.018 0.26 12.0 0.2 1 21 63 83 63 84 0.95 2 17 0.021 0.3 11.8 2.7 1 23 174 196 174 196 0.98 3 17 0.025 0.36 11.5 4.0 1 23 201 223 201 223 0.98 4 17 0.05 0.71 10.6 4.8 1 23 228 250 228 250 0.99 5 17 0.73 10 6.9 1.4 1 23 283 305 283 305 0.95 6 17 0.0024 0.034 14.7 0.4 1 23 310 332 310 332 0.98 7 17 0.016 0.23 12.1 1.2 1 23 337 359 337 359 0.97 8 17 0.0021 0.029 14.9 3.4 1 23 364 386 364 386 0.98 9 17 0.0085 0.12 13.0 0.8 1 23 391 413 391 413 0.98 10 17 0.92 13 6.6 2.7 1 21 418 438 418 442 0.89 11 17 0.05 0.71 10.6 4.8 1 23 447 469 447 469 0.99 12 17 0.73 10 6.9 1.4 1 23 502 524 502 524 0.95 13 17 0.0024 0.034 14.7 0.4 1 23 529 551 529 551 0.98 14 17 0.016 0.23 12.1 1.2 1 23 556 578 556 578 0.97 15 17 0.0021 0.029 14.9 3.4 1 23 583 605 583 605 0.98 16 17 0.0085 0.12 13.0 0.8 1 23 610 632 610 632 0.98 17 17 0.3 4.2 8.1 3.7 1 23 637 659 637 659 0.98
Sequence Information
- Coding Sequence
- ATGGACGAAAGTTATCCAATAAAATCGGAGGTGgttgtaaatgaaacattttcctattatgaaaaatatgaagATTATGGGAATGAAGAATTGAAAACGGAGCCAGTAGATTTTGAAAAACCTTTTAAATGTGAAGTAGAGGATAATCTTGCAGGGCACATTGACACATGTGTACCGACGtatcaatatatttgtaatgaatgtaattttattacaacaaagaaatattctctaatagaacatttgaaaatcaCTGAAAgcgttcaatatttttgtaaagtatgTGACTTTAAAACTATGTTGAGATGTTCAATACGGGAGCATTCCAGGATTCATAACAAAGTTGATTGtagaaatattattaaaaaatgtaactttaaaacacCACGACCTTTCTCTTTAGCAACGCAGTTGAAAACTCCAAAAAGTGCCGATGAATATAGTTGTAAGGAATATAATTATCAAACAGCGCGGAAAGAGATGCTAAAGCTACAtgcaaaaattcatactgatgaccgatataagtgtaaggaatgtgattataaaacacggtggaaacagagtctaagaCAACATGTAAGACAGCATACTGGTGATGTATTTAGGTGCAtggaatgtaactttaaaacagTGAGAAAACACAGGCTTAatgaacatatgaaaattcatatcggtggtgaatataagtgtaaggaatgtaactataaaacagtgaagaAATGTagactaaaggaacatgtcagaattcatactggtgatgaatataagtgtaacgaatgtatttataaaacaccatggaaacaaaaactaaaagaacatgtaaaaattcatactactGATCCTGAATATAATTGTAAGGAGtgtgtttataaaacattttggaaAGAGAACCTAAATAGACATGTAAAACTTCATAGTGACGATAGATAtgagtgtaaggaatgtgattataaaacaagttGGAGTCAGAATCTAAAGGTTCATATggaaattcatagtggtgatgaatataagtgcattgaatgtgactataaatcaGCGAGGAAACGGAGTCTGAagcaacatgtgaaaattcataccggtgttgaatataagtgtaacgaatgtgactttaaaacagtgaggaaatgTAGTCTAAAGgtacatgtgaaaattcatagtgacaataaatatgaatgtaaggaatgtgattataaaacaagttGGAGTCGGAGTTTAaaagttcatttgaaaattcatagtggtgatgaatataagtgtaaggagtgtgattataaaacagtgtggaaatgtagtctaaagaaacatgAGcttgtgaaaattcatactgatgatgagtataagtgtaaggaatgtaactataaaacagtgaagaAATGTagactaaaggaacatgtcagaattcatactggtgatgaatataagtgtaacgaatgtatttataaaacaccatggaaacaaaaactaaaagaacatgtaaaaattcatactactGATCCTGAATATAATTGTAAGGAGtgtgtttataaaacattttggaaAGAGAACCTAAATAGACATGTAAAACTTCATAGTGACGATAGATAtgagtgtaaggaatgtgattataaaacaagttGGAGTCAGAATCTAAAGGTTCATATggaaattcatagtggtgatgaatataagtgcattgaatgtgactataaatcaGCGAGGAAACGGAGTCTGAagcaacatgtgaaaattcataccggtgttgaatataagtgtaacgaatgtgactttaaaacagtgaggaaatgTAGTCTAAAGgtacatgtgaaaattcatagtgacaataaatatgaatgtaaggaatgtgattataaaacaagttGGAGTCGGAGTTTAaaagttcatttgaaaattcatagtggtgatgaatataagtgtaaggagtgtgattataaaacagtgtggaaatgtagtctaaagaaacatggtaaaattcatactgatgatgaatataagtatAAGAAACATGATTAG
- Protein Sequence
- MDESYPIKSEVVVNETFSYYEKYEDYGNEELKTEPVDFEKPFKCEVEDNLAGHIDTCVPTYQYICNECNFITTKKYSLIEHLKITESVQYFCKVCDFKTMLRCSIREHSRIHNKVDCRNIIKKCNFKTPRPFSLATQLKTPKSADEYSCKEYNYQTARKEMLKLHAKIHTDDRYKCKECDYKTRWKQSLRQHVRQHTGDVFRCMECNFKTVRKHRLNEHMKIHIGGEYKCKECNYKTVKKCRLKEHVRIHTGDEYKCNECIYKTPWKQKLKEHVKIHTTDPEYNCKECVYKTFWKENLNRHVKLHSDDRYECKECDYKTSWSQNLKVHMEIHSGDEYKCIECDYKSARKRSLKQHVKIHTGVEYKCNECDFKTVRKCSLKVHVKIHSDNKYECKECDYKTSWSRSLKVHLKIHSGDEYKCKECDYKTVWKCSLKKHELVKIHTDDEYKCKECNYKTVKKCRLKEHVRIHTGDEYKCNECIYKTPWKQKLKEHVKIHTTDPEYNCKECVYKTFWKENLNRHVKLHSDDRYECKECDYKTSWSQNLKVHMEIHSGDEYKCIECDYKSARKRSLKQHVKIHTGVEYKCNECDFKTVRKCSLKVHVKIHSDNKYECKECDYKTSWSRSLKVHLKIHSGDEYKCKECDYKTVWKCSLKKHGKIHTDDEYKYKKHD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -