Lyun011831.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010001942.1:3540730-3542183[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0045 0.064 13.9 0.2 1 21 64 84 64 85 0.95 2 13 1.3 18 6.1 0.5 1 23 128 150 128 150 0.95 3 13 0.035 0.5 11.1 1.3 1 23 155 177 155 177 0.97 4 13 0.00011 0.0015 19.0 1.5 1 23 182 204 182 204 0.99 5 13 0.12 1.7 9.4 4.2 1 23 209 231 209 231 0.99 6 13 0.035 0.5 11.1 1.3 1 23 236 258 236 258 0.97 7 13 3.3e-05 0.00047 20.6 1.8 1 23 263 285 263 285 0.99 8 13 8.9 1.3e+02 3.5 0.4 1 8 290 297 290 306 0.88 9 13 0.015 0.21 12.2 2.6 1 23 317 339 317 339 0.98 10 13 0.0026 0.037 14.6 1.7 1 23 344 366 344 366 0.99 11 13 0.082 1.2 9.9 2.3 1 23 371 393 371 393 0.98 12 13 0.0017 0.025 15.2 1.0 1 23 398 420 398 420 0.98 13 13 6.8e-05 0.00097 19.6 1.3 1 23 425 447 425 447 0.99
Sequence Information
- Coding Sequence
- ATGGATGTTGATAATAATGAAAGTTACCCAATAAAATCTGAAATAACCCTACaggaaacattttcattttctggAAATTATGGAGATTATGGGAATGGAGAATTGAAACCAGAGCCGGTAGATATAGAACAATATTTCAAATGTGAAGAAGAGGAGCTCACCGATGTATGTGCTGTACGCAAACATCAATATATTTGTCATGAATGTAACTTTGTTACAACCGAGAAAGATTCTTTAATTCAACACTTGAACATTGTTAAAAACGTTCGATATTTTtgcaaagaatgtaattttaaaaccctGTTTGAATGTTCTATAAAAGAGCATTTCAGGATTCACAAAGTGatGCCACGAATTTTCCCTTTAACACCACAAAGTAAACATatttgtaaggaatgtgattataaaataccatggaaagagaatataaaggaacatttaaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaaccacATGGACAGAgagtctaaagcaacatttgacaattcatagtggtgatgaatataagtgtaaggaatgtgattataaaacaccaaggaaacagagtctaaatttacatttaaaaattcatactggtgatgaatataagtgtaatgaatgtgacttcaAATCACCATGTAAGCAGAGcttaaagaaacatttaaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaaccacATGGACAGAgagtctaaagcaacatttgacaattcatagtggtgatgaatataagtgtaaggaatgtgattataaaacaccaagGAAACGGAATCTAAATTTACATCTAaagattcatactggtgatgaatataagtgtaaggaatgtgacttcAAATCACCATGGAAGCAGAGTTTAAAGacatatgtaaaaattcatactggtgatgaatataagtgtaaaaaatgtgattatagaacCAAATGGAAAGAGAGTCTAAAACAACATTTGacaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaccgtggaaaaagaatctaaagtcacatttaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacaccttgGAAACAGTGTTtaaatgtacatttaaaaattcatgctGGTGAtgtatataagtgtaaggagtgtgattataaaacgccaTGGAAAGAGAATCTAAAGCGACATTTGACAATTCATGATgatcatgaatataagtgtaaggaatgtgattataaaacaccacggATACGGAATCtaaatgtacatttaaaaactcatactggtgatgaatattag
- Protein Sequence
- MDVDNNESYPIKSEITLQETFSFSGNYGDYGNGELKPEPVDIEQYFKCEEEELTDVCAVRKHQYICHECNFVTTEKDSLIQHLNIVKNVRYFCKECNFKTLFECSIKEHFRIHKVMPRIFPLTPQSKHICKECDYKIPWKENIKEHLKIHTGDEYKCKECDYKTTWTESLKQHLTIHSGDEYKCKECDYKTPRKQSLNLHLKIHTGDEYKCNECDFKSPCKQSLKKHLKIHTGDEYKCKECDYKTTWTESLKQHLTIHSGDEYKCKECDYKTPRKRNLNLHLKIHTGDEYKCKECDFKSPWKQSLKTYVKIHTGDEYKCKKCDYRTKWKESLKQHLTIHTGDEYKCKECDYKTPWKKNLKSHLKIHTGDEYKCKECDYKTPWKQCLNVHLKIHAGDVYKCKECDYKTPWKENLKRHLTIHDDHEYKCKECDYKTPRIRNLNVHLKTHTGDEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -