Lyun014197.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002064.1:7910207-7911779[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.049 0.7 10.6 0.4 1 23 127 149 127 149 0.97 2 14 0.14 2 9.2 3.6 1 23 154 176 154 176 0.98 3 14 0.00016 0.0022 18.4 3.5 1 23 181 203 181 203 0.99 4 14 0.00031 0.0045 17.5 1.3 1 23 208 230 208 230 0.98 5 14 0.023 0.32 11.6 1.0 1 23 235 257 235 257 0.98 6 14 0.00056 0.0079 16.7 2.9 1 23 263 285 263 285 0.98 7 14 0.03 0.43 11.3 0.5 1 23 290 312 290 312 0.98 8 14 0.32 4.6 8.0 0.7 1 23 317 339 317 339 0.95 9 14 0.016 0.23 12.1 2.2 1 23 344 366 344 366 0.99 10 14 9e-05 0.0013 19.2 3.6 1 23 371 393 371 393 0.99 11 14 0.14 2 9.1 0.5 1 23 398 420 398 420 0.96 12 14 0.033 0.47 11.1 2.7 1 23 425 447 425 447 0.97 13 14 8.3 1.2e+02 3.6 7.3 1 23 452 474 452 474 0.94 14 14 0.002 0.028 15.0 0.8 1 23 479 501 479 501 0.98
Sequence Information
- Coding Sequence
- ATGAATGTAGATTATATTGAAAGTTGTACAgtaaaatctgaagtgattttaTCTGAAACGTTTTCCTTTTGTGGTGATTGTGAGAGTGCAGAATTCAAAGCCGAACCAGTAGATTACAAAGAGTCGTTTAAATATAAGGAAAAAGAAGACCTTGCAGAAGACATAAATATTCATGCTGCATCTATACAAGAATATTCTTGTAAtgagtataattttattacattggaAAAAGAGTCTCTAGTCGAACATTCCATAAAAGAGCATTTGCGAATTCACAACAGAACAGCTGATAGTTGTATTATTGAAGAATGTACTTCCAAGACACCACGAATTGTTTCTATAACACCGCATTTGACTACTCTAAGAAGTGGCAACAAATATATTTGTGATGAATGTAATTACACCGCATTCATAAAAAAGGATCTACGCacacatgtgaaaattcataaaagtgctgaatatactTGTGagaaatgtgactataaaacaagatgtaaAGGTCAATTCACagcacatgtaaaaattcatgtGGTTGGtgaatataggtgtaaagaatgcaattataaaaccgTCCAAAAACGTTATTTAAAGAGACACCTCAAAATTCATGGGGGTTACGAATATAGATGTaatgattgtgattataaaactgtatatGAATATCTTCTAAAGaagcatgtcaaaattcatacaggtgatgagtataagtgtaaagaatgcgagtataaaacagtatggaagaATGATCTAacgaaacatgtcaaaattcattccGATGGTAGTAAACATAAGTGTAGCGagtgcgattataaaacagtgcggaaagatCGTTTAatgaaacatataaaaattcatacaggtgacgaatataggTGCAacgattgtgattataaaacagtatgggaATATCTTCTAAAAcagcatgtcaaaattcatacaggtgatgaatataaatgtacagaatgtgattataaaacagtgtggaaaagtattctaaagcaacatgtcaaaattcatacaggtgacaactataagtgtaaagaatgtgattatgaaacagGGTGGAAAAAACATCTAacacaacatatcaaaattcatacagctAACAAATATAAGTGTCAAGAATGTCATTACAAAACAGTaaggaaaagtaatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaacgactgtgattataaaacaatatggggATATCTTCTAAAgcagcatgtcaaaattcatactggtgatgagtataagtgtaaagattgtgattataaaacacttcggaaaaatgctttaaaagaacattttaaaatgcATACAGGTGaccaatataaatgtaatgaatgtgattataaaacagtgtggaaacatcATCTAAAAGAACATtgcaaaattcacacaggtgacaaatataaatgtaaagagtgtggttataaaacagtgtggaaaagtagtttaaaggaacatgtcaaaattcatacagataaGAAGTGA
- Protein Sequence
- MNVDYIESCTVKSEVILSETFSFCGDCESAEFKAEPVDYKESFKYKEKEDLAEDINIHAASIQEYSCNEYNFITLEKESLVEHSIKEHLRIHNRTADSCIIEECTSKTPRIVSITPHLTTLRSGNKYICDECNYTAFIKKDLRTHVKIHKSAEYTCEKCDYKTRCKGQFTAHVKIHVVGEYRCKECNYKTVQKRYLKRHLKIHGGYEYRCNDCDYKTVYEYLLKKHVKIHTGDEYKCKECEYKTVWKNDLTKHVKIHSDGSKHKCSECDYKTVRKDRLMKHIKIHTGDEYRCNDCDYKTVWEYLLKQHVKIHTGDEYKCTECDYKTVWKSILKQHVKIHTGDNYKCKECDYETGWKKHLTQHIKIHTANKYKCQECHYKTVRKSNLKEHVKIHTGDEYKCNDCDYKTIWGYLLKQHVKIHTGDEYKCKDCDYKTLRKNALKEHFKMHTGDQYKCNECDYKTVWKHHLKEHCKIHTGDKYKCKECGYKTVWKSSLKEHVKIHTDKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -