Lyun005321.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000913.1:4529635-4546644[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 43 0.12 1.7 9.3 0.1 1 21 50 70 50 71 0.95
2 43 1.2 17 6.2 3.0 1 23 145 167 145 167 0.98
3 43 0.19 2.7 8.7 3.9 1 23 172 194 172 194 0.97
4 43 0.12 1.7 9.4 1.3 1 23 199 221 199 221 0.98
5 43 0.098 1.4 9.7 4.1 1 23 226 248 226 248 0.98
6 43 0.35 5 7.9 1.9 1 23 253 275 253 275 0.98
7 43 0.19 2.7 8.7 3.9 1 23 280 302 280 302 0.97
8 43 0.31 4.4 8.1 1.0 1 23 307 329 307 329 0.98
9 43 0.35 5 7.9 1.9 1 23 334 356 334 356 0.98
10 43 0.19 2.7 8.7 3.9 1 23 361 383 361 383 0.97
11 43 0.035 0.49 11.1 1.2 1 23 388 410 388 410 0.99
12 43 0.12 1.7 9.3 4.3 1 23 455 477 455 477 0.98
13 43 0.19 2.7 8.7 3.9 1 23 482 504 482 504 0.97
14 43 0.048 0.68 10.6 1.0 1 23 509 531 509 531 0.99
15 43 0.035 0.49 11.1 1.2 1 23 536 558 536 558 0.99
16 43 0.035 0.49 11.1 1.2 1 23 563 585 563 585 0.99
17 43 0.35 5 7.9 1.9 1 23 590 612 590 612 0.98
18 43 0.19 2.7 8.7 3.9 1 23 617 639 617 639 0.97
19 43 0.19 2.7 8.7 3.9 1 23 644 666 644 666 0.97
20 43 0.035 0.49 11.1 1.2 1 23 671 693 671 693 0.99
21 43 0.62 8.7 7.1 3.8 1 23 698 720 698 720 0.98
22 43 0.35 5 7.9 1.9 1 23 725 747 725 747 0.98
23 43 0.12 1.7 9.3 4.3 1 23 752 774 752 774 0.98
24 43 0.1 1.4 9.6 1.5 1 23 779 801 779 801 0.97
25 43 0.094 1.3 9.7 1.9 1 23 806 828 806 828 0.99
26 43 0.013 0.19 12.4 0.4 1 23 833 855 833 855 0.98
27 43 0.017 0.24 12.0 2.2 1 23 860 882 860 882 0.99
28 43 0.12 1.7 9.3 0.1 1 21 956 976 956 977 0.95
29 43 0.19 2.7 8.7 3.9 1 23 1078 1100 1078 1100 0.97
30 43 0.15 2.1 9.1 3.0 1 23 1105 1127 1105 1127 0.98
31 43 0.089 1.3 9.8 1.5 1 23 1159 1181 1159 1181 0.98
32 43 5.2 73 4.2 7.2 1 23 1186 1208 1186 1208 0.96
33 43 0.26 3.7 8.3 4.9 1 23 1213 1235 1213 1235 0.98
34 43 0.32 4.6 8.0 2.1 1 23 1240 1262 1240 1262 0.98
35 43 0.15 2.1 9.1 3.0 1 23 1267 1289 1267 1289 0.98
36 43 0.32 4.6 8.0 2.1 1 23 1294 1316 1294 1316 0.98
37 43 0.15 2.1 9.1 3.0 1 23 1321 1343 1321 1343 0.98
38 43 0.19 2.6 8.8 3.3 1 23 1348 1370 1348 1370 0.98
39 43 0.029 0.42 11.3 3.0 1 23 1375 1397 1375 1397 0.99
40 43 3.4 48 4.8 6.4 1 23 1402 1424 1402 1424 0.98
41 43 0.35 5 7.9 1.9 1 23 1429 1451 1429 1451 0.98
42 43 0.13 1.8 9.3 3.9 1 23 1510 1532 1510 1532 0.98
43 43 0.23 3.2 8.5 3.5 1 23 1537 1559 1537 1559 0.98

Sequence Information

Coding Sequence
ATGGAAGTGATTGTAAAGGAAACATTctcattttgtgaaaaatatgaagATTCTGCAAGTGAAGAGTTCAAAACAGAGGCGGTAGATTTTGAAGAAGAATATAGTGTTGGGCGGCACGTCGATATATGTGACGTACCCATACCTCAATATATTtgcaatgaatgtaattttattacaacggaGAAAGACTCTTTAATAgagcatttgaaaattactaaaaatgctCAATATTTTTGTAGGGAATGTAACTTTAACACCTGGTTCTCATGTTCGATAAAAGAACATTTCAAGATACATAACAGGGTTGGTTGTAGACATATTACTAAAACATGTATATTTGAGAcaccacaaatattttttttgacacCACAGTTGAAAACATCTTTGATAGAGCGACTAAAGGAAcctgtgaaaattcatactaatGAAGAATAtatgtgtaaggaatgtgattataaaacccagtggaaacatagtctaaagtcacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaaccctTTCGAAAcattatctaaaggaacatgtaaaaattcataccggtgatgaatataagtgtaaggaatgtgattataaaacatcctGGAAACAGAATATGAATGatcatgtgaaaattcatactggtgaagaatataagtgtaaggaatgtgattataaaacgcggtggaaacatagtctaaaatcacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacgcagtggaaacagagtctaaaatcacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaaccctTTCAAAAcattatctaaaggaacatgtaaaaattcatactggtgatgaatataagtgtaaggactgtaattataaaacaccctgGAAACAGAATATGAATGATcatgtgaaaattcacactggtgaagaatataagtgtaaggaatgtgattataaaacacagtggaaacagagtctaaagtcacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaaccctTTCGAAACATTATCtgaaggaacatgtaaaaattcatattggtgatgaatataagtgtaaggaatgtgattataaaacaccctgGAAACGGAATATGAAtgatcatatgaaaattcacactggtgaagaatataagtgtaaggaatgtgattataaaacacagtggaaacatagtctaaagaatgttgattataaaacgcagtggaaacagagtctaaagtcacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaaccctTTCAAAAcattatctaaaggaacatttaaaaatccatactggtgatgaatataagtgtaaggaatgtgattataaaaccctTTCAAAAcattatctaaaggaacatgtaaaaattcatactggtgatgaatataagtgtaaggtatgtgattataaaacaccctgGAAACGGAATATGAAtgatcatatgaaaattcacactggtgaagaatataagtgtaaggaatgtgattataaaacaccctgGAAACGGAATATGAAtgatcatatgaaaattcacactggtgaagaatataagtgtaaggaatgtgattataaaacaccctgGAAACGGAATATGAAtgatcatatgaaaattcacactggtgaagaatataagtgtaaggaatgtgattataaaacacagtggaaacagagtctaaagtcacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaaccctTTCGAAACATTATCtgaaggaacatgtaaaaattcatattggtgatgaatataagtgtaaggaatgtgattataaaaccctTTCGAAACATTATCtgaaggaacatgtaaaaattcatattggtgatgaatataagtgtaaggaatgtgattataaaacaccctgGAAACGGAATATGAAtgatcatatgaaaattcacactggtgaagaatataagtgtaaggaatgtgattataaaacacagtggaaacatagtctaaaatcacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacgcagtggaaacagagtctaaagtcacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaaccctTTCAAAAcattatctaaaggaacatttaaaaatccatactggtgatgaatataagtgtaaggtatgtgattataaaaccctgtcgaaatattatctaatggaacatgtgaaaattcatactggtgatgaatataagtgtaacaaatgtaattataaaacaccctgGAAACGGAATATGAatgaacatatgaaaattcatactgataaagaatataagtgtaaggaatgcgattataaaacgcCGTGGAAAGATAGTTTAAAggcacatgtgaaaattcatactagtgaagaatataagtgtaaggaatgtgattataaaacgaagtggaaacagagtctaaagtcacatataaaaattcatactggtgatgaatataagtgtaatgaatTTTGTATAATGGATGTCGATTGTAATGAAAGTTTTCCAATAAAAACGGAAGTGATTGTAAAGGAAACATTctcattttatgaaaaatatgaagATTCTGCAAGTGAAGAATTGAAAACAGAGGCGATAGATTTCGAAGAAGAATGTAGTGTTGAGCGGCACGTCGATATATGTGACGTACTCATACCTCAATATATTtgcaatgaatgtaattttattacaacggaGAAAGACTCTTTAATAgagcatttgaaaattactaaaaatgttcaatatttttgtaaggaatgtaactttaaCACCTGGTTCTCATGTTCGATCAAAGAACATTTTAAGATACATAAGAGGGTTGGCAGTAGACATATTACTAAAACACGTATATTTGAGACGCcacaaatatttcttttggCACCACAGTTGAAAACACCTTTGATAGAGcgactaaaggaacatgtgaaaattcatactaatgaagaatataagtgtaaggaatgtgattataaaacccaGTGGAAACATTGTCTAAAatcacatgtaaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaaccctTTCGAAAcattatctaaaggaacatgtaaaaattcataccggtgatgaatataagtgtaaggattgtgattataaaacacagtggaAACAGCATCTAAAggcacatgtgaaaattcatactggtgaagtatataagtgtaaggaatgtaattataaaacacagtggaAACATTGTCTAAAGTCGCATATAAAAATTcgtactggtgatgaatataagtgtaacgaatgtgattataaaacgcagtggaaacagagtctaaagtcacatataaaaattcatactggtgatgaatataagtgtaaaaaatgtgattgtaAAACGCTGTCAAAAcattatctaaaggaacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtaattataaaacccTGTCGAAAcattatctaaaggaacatctaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacgcagtGGAAACGGAGTTTAAAgtcacatgtaaaaattcatactggtgaagaatataagtgtaaggattgtgattataaaacacagtggaAACAGCATCTAAAggcacatgtgaaaattcatactggtgaagaatataagtgtaaggaatgtgattataaaacgcagtGGAAACGGAGTTTAAAgtcacatgtaaaaattcatactggtgaagaatataagtgtaaggattgtgattataaaacacagtggaAACAGCATCTAAAggcacatgtgaaaattcatactggtgaagaatataagtgtaaggaatgtgattataaaacgcagtGGAAACATTCTCTAAAGTCGCATATAAacattcatactggtgataaatataagtgtaacgaatgtgattataaaacacagtggaAACAGCATCTAAAggcacatatgaaaattcatactggtgaagaatataagtgtaaggaatgtgattataaaacacagtggaAACATTGTCTAAAGTcgcatataaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacgcagtggaaacagagtttaaagtcacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacacagtggaAACAGATTCTAAAgtcacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacacagtggaAACAGATTCTAAAgtcacatgtaaaaattcatactggtgatgaatataagtgcaaggattgtgattataaaacacaatggaaacAGCATCTAAAgtcacatataaaaattcatactggtgatgaatataagtgtaacgaatgtgattataaaacgcagtGGAAACATACTCTAAAGTcgcatataaaaattcatacagatgtaaagaatgtgattagaAACGCTGTCAAAACaccgtctaaaggaacatgtgacaattcatactggtga
Protein Sequence
MEVIVKETFSFCEKYEDSASEEFKTEAVDFEEEYSVGRHVDICDVPIPQYICNECNFITTEKDSLIEHLKITKNAQYFCRECNFNTWFSCSIKEHFKIHNRVGCRHITKTCIFETPQIFFLTPQLKTSLIERLKEPVKIHTNEEYMCKECDYKTQWKHSLKSHVKIHTGDEYKCKECDYKTLSKHYLKEHVKIHTGDEYKCKECDYKTSWKQNMNDHVKIHTGEEYKCKECDYKTRWKHSLKSHVKIHTGDEYKCKECDYKTQWKQSLKSHVKIHTGDEYKCKECDYKTLSKHYLKEHVKIHTGDEYKCKDCNYKTPWKQNMNDHVKIHTGEEYKCKECDYKTQWKQSLKSHVKIHTGDEYKCKECDYKTLSKHYLKEHVKIHIGDEYKCKECDYKTPWKRNMNDHMKIHTGEEYKCKECDYKTQWKHSLKNVDYKTQWKQSLKSHVKIHTGDEYKCKECDYKTLSKHYLKEHLKIHTGDEYKCKECDYKTLSKHYLKEHVKIHTGDEYKCKVCDYKTPWKRNMNDHMKIHTGEEYKCKECDYKTPWKRNMNDHMKIHTGEEYKCKECDYKTPWKRNMNDHMKIHTGEEYKCKECDYKTQWKQSLKSHVKIHTGDEYKCKECDYKTLSKHYLKEHVKIHIGDEYKCKECDYKTLSKHYLKEHVKIHIGDEYKCKECDYKTPWKRNMNDHMKIHTGEEYKCKECDYKTQWKHSLKSHVKIHTGDEYKCKECDYKTQWKQSLKSHVKIHTGDEYKCKECDYKTLSKHYLKEHLKIHTGDEYKCKVCDYKTLSKYYLMEHVKIHTGDEYKCNKCNYKTPWKRNMNEHMKIHTDKEYKCKECDYKTPWKDSLKAHVKIHTSEEYKCKECDYKTKWKQSLKSHIKIHTGDEYKCNEFCIMDVDCNESFPIKTEVIVKETFSFYEKYEDSASEELKTEAIDFEEECSVERHVDICDVLIPQYICNECNFITTEKDSLIEHLKITKNVQYFCKECNFNTWFSCSIKEHFKIHKRVGSRHITKTRIFETPQIFLLAPQLKTPLIERLKEHVKIHTNEEYKCKECDYKTQWKHCLKSHVKIHTGDEYKCKECDYKTLSKHYLKEHVKIHTGDEYKCKDCDYKTQWKQHLKAHVKIHTGEVYKCKECNYKTQWKHCLKSHIKIRTGDEYKCNECDYKTQWKQSLKSHIKIHTGDEYKCKKCDCKTLSKHYLKEHVKIHTGDEYKCKECNYKTLSKHYLKEHLKIHTGDEYKCKECDYKTQWKRSLKSHVKIHTGEEYKCKDCDYKTQWKQHLKAHVKIHTGEEYKCKECDYKTQWKRSLKSHVKIHTGEEYKCKDCDYKTQWKQHLKAHVKIHTGEEYKCKECDYKTQWKHSLKSHINIHTGDKYKCNECDYKTQWKQHLKAHMKIHTGEEYKCKECDYKTQWKHCLKSHIKIHTGDEYKCKECDYKTQWKQSLKSHVKIHTGDEYKCKECDYKTQWKQILKSHVKIHTGDEYKCKECDYKTQWKQILKSHVKIHTGDEYKCKDCDYKTQWKQHLKSHIKIHTGDEYKCNECDYKTQWKHTLKSHIKIHTDVKNVIRNAVKTPSKGTCDNSYW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-