Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010001223.1:1907883-1909602[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.7 23 5.8 1.4 1 23 89 111 89 111 0.93

2 15 0.15 2.1 9.1 1.0 1 23 116 138 116 138 0.97

3 15 0.0061 0.086 13.5 0.8 1 23 143 165 143 165 0.98

4 15 0.37 5.3 7.8 1.3 1 23 170 192 170 192 0.98

5 15 0.0024 0.034 14.7 2.4 1 23 197 219 197 219 0.99

6 15 0.00085 0.012 16.1 1.6 1 23 252 274 252 274 0.99

7 15 0.013 0.18 12.4 1.0 1 23 279 301 279 301 0.98

8 15 0.047 0.67 10.6 0.7 1 23 306 328 306 328 0.98

9 15 0.00044 0.0062 17.1 1.3 1 23 333 355 333 355 0.98

10 15 0.62 8.8 7.1 3.0 1 23 360 382 360 382 0.96

11 15 0.054 0.77 10.5 1.9 1 23 387 409 387 409 0.98

12 15 0.0025 0.035 14.7 2.8 1 23 414 436 414 436 0.99

13 15 2.4e-05 0.00035 21.0 2.0 1 23 441 463 441 463 0.99

14 15 0.03 0.42 11.3 1.8 1 23 468 490 468 490 0.97

15 15 0.024 0.34 11.6 1.0 1 23 495 517 495 517 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.7	23	5.8	1.4	1	23	89	111	89	111	0.93
2	15	0.15	2.1	9.1	1.0	1	23	116	138	116	138	0.97
3	15	0.0061	0.086	13.5	0.8	1	23	143	165	143	165	0.98
4	15	0.37	5.3	7.8	1.3	1	23	170	192	170	192	0.98
5	15	0.0024	0.034	14.7	2.4	1	23	197	219	197	219	0.99
6	15	0.00085	0.012	16.1	1.6	1	23	252	274	252	274	0.99
7	15	0.013	0.18	12.4	1.0	1	23	279	301	279	301	0.98
8	15	0.047	0.67	10.6	0.7	1	23	306	328	306	328	0.98
9	15	0.00044	0.0062	17.1	1.3	1	23	333	355	333	355	0.98
10	15	0.62	8.8	7.1	3.0	1	23	360	382	360	382	0.96
11	15	0.054	0.77	10.5	1.9	1	23	387	409	387	409	0.98
12	15	0.0025	0.035	14.7	2.8	1	23	414	436	414	436	0.99
13	15	2.4e-05	0.00035	21.0	2.0	1	23	441	463	441	463	0.99
14	15	0.03	0.42	11.3	1.8	1	23	468	490	468	490	0.97
15	15	0.024	0.34	11.6	1.0	1	23	495	517	495	517	0.98

Sequence Information

Coding Sequence: ATGGACGTAAGTTATTCAATAAAGTCAGAGGtgattgtaaatgaaacattttcctattgcagaaaatatgaagattgtggAAATGAAGGATTGAAAACGGAGGTAGTAGATTTTGAAAAACCTTTTAAATGTGAAGTAGAGAATAACCTTGCCGATCACGTTGATATATGTGGTGTATCCGGTGATGAATGTAAGGAatatgattataaaacggtgttgaaacaaaatctaaagaaacatgtgaCGATTCATACTAATAATCAATATATGTGCAAGGAATGCGATTATCAAACGCTGTGGAAAGAAAACCTAAAagcacatgtgaaaattcatagtgacaatgaatataaatgtaaggaatgtaattacaaaacacCTTGGAAACAAAGTCTAAAAGAACATGGGAAAATTCATAAtgacaataaatatgagtgtaaggaatgtgattataaaacaagctGGAAACGAAGTCTAAAGGctcatgtgaaaattcatagtggtgatcaatataaatgtagggaatgtgactttaaaacagtgtggaaacagaGACTAAatgaacatatgaaaattcatattggtggtgaatataagtgtaaggaatgtaactataaaacagtaaggaAAAATAGACTTAAGGAAcacgtgaaaattcatactggtgatgaatatatgtgtaatgtatgtatttataaaacaccatggaaacagaaGCTAAgagaacatgtgaaaattcatactactgatcctgaatataagtgtaaggagtgtgattataaaacgagatggaaagaaaacctaaatagacatgtgaaaattcatagtaatgacgaatataagtgtaaggaatgtaattataaaacaccatggaaacaaaatctaaaaatacatgtgaaaattcatagtgatggtaaatatgagtgtaaagaatgtgattttaatagTAGTTGGAGACAGAGTCTAGAACTTCATATGAAAAGTCATAGTgatgatgaatacaagtgtaacgAGTGTGACTATAGAACACAAATGAAGAATAATCTAGCAAAACATATGACCGTTCATATTGCTGGTCaacataagtgtaaggaatgtgattataaaacgctgtggaaagaaaacctaaaacgacatgtgaaaattcatagtgacgatgaatataagtgtaaggaatgtaattacaaaacaccatggaaacagagtTTAAAAGAACATAGGAAAATTCATAGTGACAATAAATATCAGTGtaataaatgtgattataaaacaagttGGAAACGGAGTCTAAAGactcatatgaaaattcatagtggtgatcaatataagtgtaaagaatgtgactatcaAACAGTAAGGCAAACTAGCCTTAAAcagcatatgaaaattcatagtggtgatcaatataagtgtaaagaatgtgactataaaacattaAGGAAAGATAGGCTAAAAGAACATGTGAAAGttcataccggtgatgaatataagtgtaaggaatgtgattataaaacagtgtggaaaaatagtctaaaggaacatgtgaaaattcatactggtgatgaatataagtgtaacgaatgtatttataaaacaccatggaaacagagGCTAAgaaaacatgtgaaaattcatattaCTGAtcctgaatataagtgtaagaaataA
Protein Sequence: MDVSYSIKSEVIVNETFSYCRKYEDCGNEGLKTEVVDFEKPFKCEVENNLADHVDICGVSGDECKEYDYKTVLKQNLKKHVTIHTNNQYMCKECDYQTLWKENLKAHVKIHSDNEYKCKECNYKTPWKQSLKEHGKIHNDNKYECKECDYKTSWKRSLKAHVKIHSGDQYKCRECDFKTVWKQRLNEHMKIHIGGEYKCKECNYKTVRKNRLKEHVKIHTGDEYMCNVCIYKTPWKQKLREHVKIHTTDPEYKCKECDYKTRWKENLNRHVKIHSNDEYKCKECNYKTPWKQNLKIHVKIHSDGKYECKECDFNSSWRQSLELHMKSHSDDEYKCNECDYRTQMKNNLAKHMTVHIAGQHKCKECDYKTLWKENLKRHVKIHSDDEYKCKECNYKTPWKQSLKEHRKIHSDNKYQCNKCDYKTSWKRSLKTHMKIHSGDQYKCKECDYQTVRQTSLKQHMKIHSGDQYKCKECDYKTLRKDRLKEHVKVHTGDEYKCKECDYKTVWKNSLKEHVKIHTGDEYKCNECIYKTPWKQRLRKHVKIHITDPEYKCKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -