Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010002062.1:313617-315362[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.067 0.94 10.2 1.1 1 23 152 174 152 174 0.97

2 14 0.0015 0.021 15.4 2.3 1 23 179 201 179 201 0.98

3 14 0.0062 0.088 13.4 0.6 1 23 206 228 206 228 0.98

4 14 0.076 1.1 10.0 0.6 1 23 241 263 241 263 0.98

5 14 0.038 0.53 11.0 0.9 1 23 268 290 268 290 0.98

6 14 0.00078 0.011 16.2 1.8 1 23 295 317 295 317 0.99

7 14 0.019 0.27 11.9 1.5 1 23 322 344 322 344 0.98

8 14 0.028 0.39 11.4 0.9 1 23 349 371 349 371 0.98

9 14 0.026 0.36 11.5 0.7 1 23 376 398 376 398 0.98

10 14 0.023 0.33 11.6 1.4 1 23 403 425 403 425 0.98

11 14 4.1e-05 0.00058 20.3 1.6 1 23 430 452 430 452 0.99

12 14 0.00016 0.0023 18.4 4.1 1 23 457 479 457 479 0.99

13 14 1e-05 0.00015 22.2 1.9 1 23 484 506 484 506 0.99

14 14 0.012 0.17 12.5 2.5 1 23 511 533 511 533 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.067	0.94	10.2	1.1	1	23	152	174	152	174	0.97
2	14	0.0015	0.021	15.4	2.3	1	23	179	201	179	201	0.98
3	14	0.0062	0.088	13.4	0.6	1	23	206	228	206	228	0.98
4	14	0.076	1.1	10.0	0.6	1	23	241	263	241	263	0.98
5	14	0.038	0.53	11.0	0.9	1	23	268	290	268	290	0.98
6	14	0.00078	0.011	16.2	1.8	1	23	295	317	295	317	0.99
7	14	0.019	0.27	11.9	1.5	1	23	322	344	322	344	0.98
8	14	0.028	0.39	11.4	0.9	1	23	349	371	349	371	0.98
9	14	0.026	0.36	11.5	0.7	1	23	376	398	376	398	0.98
10	14	0.023	0.33	11.6	1.4	1	23	403	425	403	425	0.98
11	14	4.1e-05	0.00058	20.3	1.6	1	23	430	452	430	452	0.99
12	14	0.00016	0.0023	18.4	4.1	1	23	457	479	457	479	0.99
13	14	1e-05	0.00015	22.2	1.9	1	23	484	506	484	506	0.99
14	14	0.012	0.17	12.5	2.5	1	23	511	533	511	533	0.99

Sequence Information

Coding Sequence: ATGAATATTAATTCTACTGAAAGTTGTACAATAAAATCGGAaatgattttaacagaaacatttagTGGAAACTATGAAGATTGTGGTAATGAAGAACTGAAAACAGAGCCAGTAGATTACAAAGAATTGTTTAAGTGTAAGGAAGAAGATGATCCTGCAGAGCACATGGATGCATCTGCTGACCCAATACAACAGTGTTCTGGTAATGAGTGTAACTTTACAACAAAGGAAAAAGATTCTCCGCTAGCGctagaacatttaaaaattataaaaaatgttaaatatttttgtaagcaatGTAACTTTACATCTCATTTGGAATGTTTCataaaaaagcatttgaaaattcacaAGGGAGTACATGATACTTATATTACtaaggaatgtaattttaagaagCCACAGAGTTTCTCTTTAGCACCAAATTTAAAAGCGTCAAAAAGTGATGATGGatacatttgtaatgaatgtaattttaccacGTTGAACAAAAATTCTCTAAGGAACCATTTGACaatccatacaggtgatgaattcaagtgtaaagaatgtgattataaaaccgtgtggaaatataatctaaagaaacatctcaaaattcatacaggtgaagaatataagtgtaatgtatgtgattataaaacagtgtggaaaagctcgctaaaggaacatgtcaaaattcatacagttgaaagatataagtgtaaagaatgttgtgaatataagtgtgaactatgtgattataaaacagtgtggaaacaaagtctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatttggaaaacacttctaaaggaacatgtcaaaattcatacaaacgaggaatataagtgtaacaaatgtgattataaaacagcgtggaactataatctaaagaaacatatcaaagttcatacaggtgaggaatataagtgtaaagaatgtgattataaaacggtgtgggaacataatctaaaggtacatgtcaaaattcatacaaatgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaacaaagtctaagggaacacgtcaaaattcatacaaatgatgaatataagtgtaatgaatgtgattataaaacaccgtggaaaaaacttctaaaggaacatgtcaaaattcatgaaGATGACAAATATACGTGTaacaaatgtgattataaaacatcatggaAACGTAGTCTAAGGGAACATATCACAATTCATACAGGttttgaatataagtgtaaagagtgtgattacaaaacagtacgGAAACGTAATCTTCAGGAACATGTCAAAGTTCATACAGGtaaggaatataagtgtaacaaatgtgattataaaacagtgcggaaacataatctaaaggaacatgtcaaaattcatacaaatgatgaatataagtgtaacgaatgtgattataaaacggcacGAAACaataatctaaagaaacatctcaaaattcatacaggcgaggaatataaatgtaaagaatgtgattataaaacagtgtggaaaaaccAACTAAAATCACATTTGAAAAGACATACAGGTGATTTACATAATCTGAAAGTAGAGTTAATTTAG
Protein Sequence: MNINSTESCTIKSEMILTETFSGNYEDCGNEELKTEPVDYKELFKCKEEDDPAEHMDASADPIQQCSGNECNFTTKEKDSPLALEHLKIIKNVKYFCKQCNFTSHLECFIKKHLKIHKGVHDTYITKECNFKKPQSFSLAPNLKASKSDDGYICNECNFTTLNKNSLRNHLTIHTGDEFKCKECDYKTVWKYNLKKHLKIHTGEEYKCNVCDYKTVWKSSLKEHVKIHTVERYKCKECCEYKCELCDYKTVWKQSLKEHVKIHTGDEYKCKECDYKTIWKTLLKEHVKIHTNEEYKCNKCDYKTAWNYNLKKHIKVHTGEEYKCKECDYKTVWEHNLKVHVKIHTNDEYKCKECDYKTVWKQSLREHVKIHTNDEYKCNECDYKTPWKKLLKEHVKIHEDDKYTCNKCDYKTSWKRSLREHITIHTGFEYKCKECDYKTVRKRNLQEHVKVHTGKEYKCNKCDYKTVRKHNLKEHVKIHTNDEYKCNECDYKTARNNNLKKHLKIHTGEEYKCKECDYKTVWKNQLKSHLKRHTGDLHNLKVELI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -