Lyun009461.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001756.1:113549-115966[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.04 0.57 10.9 1.0 1 23 75 97 75 97 0.97
2 20 0.03 0.43 11.3 0.5 1 23 102 124 102 124 0.98
3 20 1.3 18 6.1 0.4 2 23 130 151 129 151 0.95
4 20 0.0095 0.13 12.8 1.8 1 23 156 178 156 178 0.98
5 20 0.16 2.3 9.0 0.6 2 23 184 205 183 205 0.97
6 20 0.00025 0.0036 17.8 1.4 1 23 210 232 210 232 0.99
7 20 0.001 0.015 15.9 0.7 1 23 237 259 237 259 0.99
8 20 0.16 2.3 9.0 3.7 1 23 291 313 291 313 0.98
9 20 0.0097 0.14 12.8 4.0 1 23 318 340 318 340 0.99
10 20 0.41 5.9 7.7 0.9 1 23 345 367 345 367 0.96
11 20 0.029 0.41 11.3 0.9 1 23 372 394 372 394 0.98
12 20 0.12 1.7 9.4 2.1 1 23 399 421 399 421 0.98
13 20 0.05 0.71 10.6 1.2 1 23 426 448 426 448 0.98
14 20 0.023 0.33 11.6 1.3 1 23 453 475 453 475 0.98
15 20 0.02 0.28 11.8 0.5 1 23 480 502 480 502 0.98
16 20 0.0097 0.14 12.8 4.0 1 23 527 549 527 549 0.99
17 20 0.31 4.5 8.1 0.8 1 23 554 576 554 576 0.96
18 20 0.023 0.33 11.6 1.3 1 23 612 634 612 634 0.98
19 20 0.02 0.28 11.8 0.5 1 23 639 661 639 661 0.98
20 20 0.13 1.8 9.3 1.8 1 23 666 688 666 688 0.98

Sequence Information

Coding Sequence
ATGGATGTTGACTATAATGTAAGTTGCCCAATAAAATCGGAAGTGGTtataaacgaaacattttcatacTTTGAGAAATATGAAGattatgggaataaagaaataaaaattgagcCCCTAAATTTCGAAGAAGATAATCTCGGGGAGCAAACCGATTTACATGATAAGTATACACATCAAGATATTTATAATGaaaAAcctttgcaaattaaaaatgttctatACTTTTGtcaggaatgtgattataaaacaccatggagaAACAATCTAAAgagacatgtaaaaattcacagTGAAACTGGATAtatgtgtaaggaatgtgattatagaacaCCGTGGAAACgaagtctaaaggaacatgtacgAATTCACACTGGTAATGAActtaagtgtgaagaatgtgattataagacacCGTGGAAGAAGAGGCTAAcagaacatgtaaaaattcatactggtgatgaatatagatgcaaagaatgtgattataaaacactacgGAAgcagagtctaaaggaacatgtacgaattcacactggtgataaattgaagtgtaaagaatgtgattataagacacCATGGAAGAATAGCCTCaaagaacatgtaaaaattcataccagtgaggaatataagtgtaacgaatgtgattataaaacaatgcggaaacagagtctaaatgAACATATAaagattcatactggtgatgaatataaatgtaaccaatgtaattataaaacaccacgGAAACAGGGGTTAGAGGTGCATGTGAAAATCCATACttgtgaggaatataagtgtaaagaatgtgattataaaacactgtggaaacaCAGATTGaaggaacatataaaaattcatactggtgatgaatataagtgtaaggaatgcgaATATAAAACACCGTGTAGGTACAATCTAAACACGcatgtgaaaattcacactggtaatgattataagtgtaaagaatgtgattttaaaacacgtTGGAAACacaatctaaaggaacatttgagaattcatactggtgatgaatataagtgtactgaatgtgattataaaacacagtggaAAAAGGGTCTCAcgggacatttaaaaattcatactggtgatcaatataagtgtaagctTTGTGATTATAGAACACCATGGAGGTACAATCTAAACatgcatgtgaaaattcatactggtgatgaatataattgtaaacaatgtgattttaaaacacgttggaagcagagtctaaaggaacatttaagaattcatactggtgatgtatataagtgtaacgaatgtgattatagaacaCAGTGGAAAAAGAATCTAAcgggacatttaaaaattcataccggtgatgaatataagtgtaatgaatgtggttataaaacacagtggaaaaagaatctaaagggacatttaaaaatacacagTGGTGATGAATATACGTGTAAGGAATGCGATTTTAGAACACCTTGGAGGGACAATCTAAACACTcatgtgaaaattcacactggtgatgaatataaaacaCAGTGGAAAAAGAATCTAAcgggacatttaaaaattcataccggtgatgaatataagtgtaaagaatgtgattttaaaacacgtTGGAAACacaatctaaaggaacatttaagaattcatactggtgatgaatataagtgtaacgaatgtgattataaaacacagtggaAAAAGGGTCTCAcgggacatttaaaaattcatactggtgatcaatataagtgtaagctTTGTGATTATAGAACACCATGGagaacaCAGTGGAAAAAGAATCTAAcgggacatttaaaaattcataccggtgatgaatataagtgtaatgaatgtggttataaaacacagtggaaaaagaatctaaagggacatttaaaaatacacagTGGTGATGAATATACGTGTAAGGAATGCGATTTTAGAACACCTTGGAGGGACAATCTAAACACTcatgtgaaaattcacactggtgatgaatataagtgtaatgaatgtgtttataaaacaccgtggaaacagaatctaaagaaacataagAAAATTCATACCTGa
Protein Sequence
MDVDYNVSCPIKSEVVINETFSYFEKYEDYGNKEIKIEPLNFEEDNLGEQTDLHDKYTHQDIYNEKPLQIKNVLYFCQECDYKTPWRNNLKRHVKIHSETGYMCKECDYRTPWKRSLKEHVRIHTGNELKCEECDYKTPWKKRLTEHVKIHTGDEYRCKECDYKTLRKQSLKEHVRIHTGDKLKCKECDYKTPWKNSLKEHVKIHTSEEYKCNECDYKTMRKQSLNEHIKIHTGDEYKCNQCNYKTPRKQGLEVHVKIHTCEEYKCKECDYKTLWKHRLKEHIKIHTGDEYKCKECEYKTPCRYNLNTHVKIHTGNDYKCKECDFKTRWKHNLKEHLRIHTGDEYKCTECDYKTQWKKGLTGHLKIHTGDQYKCKLCDYRTPWRYNLNMHVKIHTGDEYNCKQCDFKTRWKQSLKEHLRIHTGDVYKCNECDYRTQWKKNLTGHLKIHTGDEYKCNECGYKTQWKKNLKGHLKIHSGDEYTCKECDFRTPWRDNLNTHVKIHTGDEYKTQWKKNLTGHLKIHTGDEYKCKECDFKTRWKHNLKEHLRIHTGDEYKCNECDYKTQWKKGLTGHLKIHTGDQYKCKLCDYRTPWRTQWKKNLTGHLKIHTGDEYKCNECGYKTQWKKNLKGHLKIHSGDEYTCKECDFRTPWRDNLNTHVKIHTGDEYKCNECVYKTPWKQNLKKHKKIHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-