Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010002108.1:5343215-5345853[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.053 0.75 10.5 1.0 3 23 151 171 149 171 0.96

2 17 0.047 0.66 10.7 0.7 1 23 176 198 176 198 0.98

3 17 0.01 0.14 12.7 0.7 1 23 203 225 203 225 0.98

4 17 0.0025 0.036 14.7 1.8 1 23 230 252 230 252 0.99

5 17 0.0031 0.044 14.4 1.3 1 23 257 279 257 279 0.99

6 17 0.14 2 9.1 2.6 1 23 284 306 284 306 0.98

7 17 0.009 0.13 12.9 1.2 1 23 311 333 311 333 0.98

8 17 0.0011 0.015 15.8 0.8 1 23 338 360 338 360 0.98

9 17 0.53 7.4 7.4 0.9 1 23 365 387 365 387 0.97

10 17 0.028 0.4 11.4 0.7 1 23 392 414 392 414 0.97

11 17 0.00046 0.0065 17.0 0.7 1 23 419 441 419 441 0.99

12 17 4.8 69 4.3 3.8 1 23 446 468 446 468 0.92

13 17 0.031 0.43 11.2 1.3 1 23 473 495 473 495 0.98

14 17 0.027 0.39 11.4 1.1 1 23 500 522 500 522 0.98

15 17 0.0044 0.062 13.9 0.9 1 23 527 549 527 549 0.98

16 17 0.056 0.79 10.4 0.9 1 23 554 576 554 576 0.98

17 17 0.033 0.47 11.1 1.3 1 23 581 603 581 603 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.053	0.75	10.5	1.0	3	23	151	171	149	171	0.96
2	17	0.047	0.66	10.7	0.7	1	23	176	198	176	198	0.98
3	17	0.01	0.14	12.7	0.7	1	23	203	225	203	225	0.98
4	17	0.0025	0.036	14.7	1.8	1	23	230	252	230	252	0.99
5	17	0.0031	0.044	14.4	1.3	1	23	257	279	257	279	0.99
6	17	0.14	2	9.1	2.6	1	23	284	306	284	306	0.98
7	17	0.009	0.13	12.9	1.2	1	23	311	333	311	333	0.98
8	17	0.0011	0.015	15.8	0.8	1	23	338	360	338	360	0.98
9	17	0.53	7.4	7.4	0.9	1	23	365	387	365	387	0.97
10	17	0.028	0.4	11.4	0.7	1	23	392	414	392	414	0.97
11	17	0.00046	0.0065	17.0	0.7	1	23	419	441	419	441	0.99
12	17	4.8	69	4.3	3.8	1	23	446	468	446	468	0.92
13	17	0.031	0.43	11.2	1.3	1	23	473	495	473	495	0.98
14	17	0.027	0.39	11.4	1.1	1	23	500	522	500	522	0.98
15	17	0.0044	0.062	13.9	0.9	1	23	527	549	527	549	0.98
16	17	0.056	0.79	10.4	0.9	1	23	554	576	554	576	0.98
17	17	0.033	0.47	11.1	1.3	1	23	581	603	581	603	0.97

Sequence Information

Coding Sequence: ATGGATATTAATTCTACTGAAAGTTGTACAATAAAATCggaaattattttaacagaaacattttgtgGAAACTATGAAGATTGTGGTAATGAAGAACTGAAAACGGAGCCAGTAGATTACAAAGAATTGTTTAAGTGTAAGGAAGATGATCCTGCAGAGCACATGGATACATCTGCTACCCCAATACAACAATTTTCTGGTAATGAGCGTAACTTTATAACAATGAAAAAAGATTCCCTGCCAGGACAtttaaatattaccaaaaatattgaatatttttgtgAGTACTGTAACTTTAGAACTCATTTGGAATGTTTCATAAAagagcatttgaaaattcacaAGGGAGTAGATGATACATATATTACTAAGGAATCTAATTTTAAGAAGCCGCCGAGTTTTTCTTTAACACCACATGTAAAAAAGTCAAGAAGTGATAAAGAATCCATTTgtgatgaatgtaattttaccacattaaacaaaaattctctAAGGAGACATATGACAATTCATACAGGTgtcgaatataagtgtaatgaatgtgattttaaaacagtgtggaaacgtAGCCTCAATAAACATGTCATagttcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtgtggaaatatAATCTAGAAGgacatcttaaaattcatacaggtgagaaatacaagtgtaaagaatgtgattataaaacaacatggaaatataatctaaaggaacacgtcaaaatacatacaggtgacgaatataagtgtaatgtatgtgattataaaacaacgtggaaaaataatttaaaggagcatctcaaaattcatacaggtgtggaatataagtgtaaagaatgtgattataaaacagtgtggaaacataGACTAAACgtacatctcaaaattcatacaggtgaggaatataggtgtaaagaatgtgattataaaacagtgtggaaaagtagtctaaaggaacatgtcaaaagtCATACAgatgaggaatataagtgtaaagaatgtgattataaaacagcgagGAAAAAACTTCTGAAGGGACATGTCGAAATTCATGAAGGTGAGAAATATATGTGTAACGAATGTGTTTATAACACATTGCGGAAACGTAGTCTAAAGgaccatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaaaatcttctaaagaaacatgttataattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgcgggaaaatcttctaaaggtacatgtcaaaattcatacgggcGAGGactataagtgtaacgaatgtgattataaaacattgtgtAAATATAGTCTAAaagaacacgtcaaaattcatacaagtgaggaatataaatgtaaagaatgtgattataaaacagtgtggaaatatAGTATGAAGGagcacatcaaaattcatacaggtgaggaatataagtgtaaagaatgtgattataaaacagtgtggaaacgtAGTCTACGtgaacacgtcaaaattcatacgggtgagGAATatcagtgtaaagaatgtgattataaaacggtgtggaaatataatctaaaggaacatgtcaaaattcattcaggtgaggaatataagtgtaaagagtgtgattataaatcagtaTGGAAACGtggtctaaagcaacatgtcaaaattcatactggtgaggaatataattgtaaacaatgtgattataaaacagcacggaaaaaactttttaaggGACATGTTGAAATTCATAAAGGTgacaaatatatataa
Protein Sequence: MDINSTESCTIKSEIILTETFCGNYEDCGNEELKTEPVDYKELFKCKEDDPAEHMDTSATPIQQFSGNERNFITMKKDSLPGHLNITKNIEYFCEYCNFRTHLECFIKEHLKIHKGVDDTYITKESNFKKPPSFSLTPHVKKSRSDKESICDECNFTTLNKNSLRRHMTIHTGVEYKCNECDFKTVWKRSLNKHVIVHTGEEYKCKECDYKTVWKYNLEGHLKIHTGEKYKCKECDYKTTWKYNLKEHVKIHTGDEYKCNVCDYKTTWKNNLKEHLKIHTGVEYKCKECDYKTVWKHRLNVHLKIHTGEEYRCKECDYKTVWKSSLKEHVKSHTDEEYKCKECDYKTARKKLLKGHVEIHEGEKYMCNECVYNTLRKRSLKDHVKIHTGDEYKCKECDYKTVWKNLLKKHVIIHTGDEYKCKECDYKTVRENLLKVHVKIHTGEDYKCNECDYKTLCKYSLKEHVKIHTSEEYKCKECDYKTVWKYSMKEHIKIHTGEEYKCKECDYKTVWKRSLREHVKIHTGEEYQCKECDYKTVWKYNLKEHVKIHSGEEYKCKECDYKSVWKRGLKQHVKIHTGEEYNCKQCDYKTARKKLFKGHVEIHKGDKYI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -