Lyun014897.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002119.1:3949700-3952763[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.082 1.2 9.9 0.4 1 21 94 114 94 116 0.89
2 26 0.0062 0.088 13.4 1.3 1 23 121 143 121 143 0.97
3 26 0.022 0.31 11.7 4.3 1 23 148 170 148 170 0.99
4 26 0.0085 0.12 13.0 0.9 1 23 175 197 175 197 0.98
5 26 7.5 1.1e+02 3.7 0.4 1 11 202 212 202 224 0.70
6 26 0.63 8.9 7.1 3.5 1 23 229 251 229 251 0.98
7 26 0.4 5.7 7.7 0.4 1 23 260 282 260 282 0.95
8 26 1.9 27 5.6 4.5 1 23 287 309 287 309 0.98
9 26 1.3 19 6.1 0.9 1 23 314 336 314 336 0.88
10 26 0.082 1.2 9.9 1.3 1 23 341 363 341 363 0.98
11 26 0.057 0.8 10.4 1.6 1 23 368 390 368 390 0.98
12 26 1.7 25 5.7 3.6 1 23 395 417 395 417 0.97
13 26 3e-05 0.00043 20.7 5.2 1 23 422 444 422 444 0.99
14 26 0.85 12 6.7 3.9 1 23 449 471 449 471 0.98
15 26 1.5 21 5.9 0.4 1 23 480 502 480 502 0.95
16 26 0.26 3.6 8.3 3.4 1 23 507 529 507 529 0.98
17 26 1.3 19 6.1 0.9 1 23 534 556 534 556 0.88
18 26 0.089 1.3 9.8 2.1 1 23 561 583 561 583 0.98
19 26 1.7 25 5.7 3.6 1 23 608 630 608 630 0.97
20 26 3e-05 0.00043 20.7 5.2 1 23 635 657 635 657 0.99
21 26 0.6 8.5 7.2 4.1 1 23 662 684 662 684 0.98
22 26 0.75 11 6.9 0.3 1 23 693 715 693 715 0.92
23 26 0.64 9.1 7.1 4.0 1 23 720 742 720 742 0.98
24 26 0.89 13 6.6 1.4 1 23 747 769 747 769 0.94
25 26 0.09 1.3 9.8 1.3 1 23 774 796 774 796 0.97
26 26 0.00021 0.0029 18.1 1.3 1 23 801 823 801 823 0.99

Sequence Information

Coding Sequence
atGAACGTCGATTATAATGAAACATATCCTATAAAATCGGAAGTGAttgaaaatgaaacattttcgtATTATGGAAAATATACAGATTATGTGaatgaagaattgaaaacaGAGTCTGCAGACTTTGAAGAATCTATTAAATGCGAAGAAGATAATCCTGGGGACTGCAAAGATATTCATCATATACCCATACGTCAACATACtggtaatgaatgtaattttattgcaaCTGAGAAATATCCTCTAACAAAACATATggaaattactaaaaatgttagATATTTTTGCgaggaatgtgattatataaCACCGAGAAAgcagagtctaaaggaacatccgaaaattcatactggtgatgaatataagtgtagggaatgtgattataaaacacctagaaaacaaagtctaaaggaacatgagactattcatactggtgatgaatatcagtgtacagaatgtgattataaaacaccacggAAACGGTGTATAAAACAACATcagaaaattcatacaggttatgaatataagtgtaaagaatgtgattataaaacaccacgaAAATGGAGTATAAAggaacatgaaaaaattcatactggtaatgagtataagtgtgaagaatgcgattacaaaacaccatggataCAGAGTATAAAGCAgcatgaaaaaattcatactggttatgaatataaatgtaacgaatgtgattataaaacagtgtggagaCGGTGTCTAAAGGACCATGCTCGAAAACATGTAAAACTTCATACTGACGTTGAGtacaagtgtaaggaatgtgattataaaacaccttgGAAACCGAGTCTAAAGGGGCATgagaaaattcatactggtgatgaatataaatgtaaccaatgtgattataaaacaaagtggAAGCAGTGTCTAAAGGAGCATgagaaaattcatagtggtgataaatataagtgtaaggaatgtgattatacaaCACTTTGGAAGcagaatctaaagcaacatgagGAAATTCATACTGctcatgaatataagtgtgaggaatgtgattataaaacacgatTAAAACGGAGTATAAAggaacatgaaaaaattcatactggtgatgaatatcagtgtacagaatgtgattataaaacacaacaaaaacggAGTATAAAggaacatgaaaaaattcatactggtgatgaatataagtgtaaggaatgtaagtATAGAACActatggaaacagaatctaaaaaGACATGAAAAAACTCATACTGAtactgaatataagtgtaatgaatgtaactatACGACAGTGCAGAAACATACTCTACAAAAACATATGAAAACTCATACTTCcaaagaatataagtgtaaggaatgtgattataaaacggtctGGAGACGGTGTCTAAAGGACCATGCTCgaaaacatgtgaaaattcatattgatgaagaatataagtgtagggaatgtgattataaaacaccttgGAAACCGAGTCTAAAGGGGCATgagaaaattcatactggtgatgaatataaatgtaacgaatgtgattataaaacaaaatggaaacagTGCCTAAAAGCACATgagaaaattcatagtggtgataaatataagtgtaaggaatgtgattatacaaCACTTTGGAAGcagaatctaaagcaacatgagGAAATTCATACTGctcatgaatataagtgtgaggaatgtgattataaaacacgatTAAAACGGAGTATAAaggaacataaaaaaattcatactggtattGAATATAAAGCACGACAAAAACGGAGTGTAAAGGAACTTGTAAAAATGCTtgctggtaatgaatataagtgtaaggaatgtaagtATAGAACActatggaaacagaatctaaaaaGACATGAAAAAACTCATACTGAtactgaatataagtgtaatgaatgtaactatACGACAGTGCAGAAACATACTCTACAAAAACATATGAAAACTCATACTTCCAAAGAATATAAGTGcacagaatgtgattataaaacggtctGGAGACGGTGTCTAAAGAATCATGCTCgaaaacatgtgaaaattcatattgatgaagaatataagtgtaaggaatgtgattataaaacaccttgGAAACCGAGTTTAATGGGACACgagaaaattcatactggtgatgaatataagtgtaaccaatgtgattataaaacaaaatggaaacagTGCCTAAAAGCACATGAGAaagttcatactggtgatgaatataagtgtaaggaatgtgattatacaacactttggaaacagaatctaaagtcACACGagaaaattcataccggtgatgaatataagtgtgaggaatgtgattataaaacacaacaaaaacggagtataaaagaacataaaataattcatactggtaataaGTATaagtgtgcagaatgtgattataaaacacctcagaaacagaatctaaagcaacatgctcggaaacatgtgaaaattcatattgatgatgaatataaatgtgagGAATCCGATGATAAAATACTGTTTGATGAAGAGTATAAAGGAACATGA
Protein Sequence
MNVDYNETYPIKSEVIENETFSYYGKYTDYVNEELKTESADFEESIKCEEDNPGDCKDIHHIPIRQHTGNECNFIATEKYPLTKHMEITKNVRYFCEECDYITPRKQSLKEHPKIHTGDEYKCRECDYKTPRKQSLKEHETIHTGDEYQCTECDYKTPRKRCIKQHQKIHTGYEYKCKECDYKTPRKWSIKEHEKIHTGNEYKCEECDYKTPWIQSIKQHEKIHTGYEYKCNECDYKTVWRRCLKDHARKHVKLHTDVEYKCKECDYKTPWKPSLKGHEKIHTGDEYKCNQCDYKTKWKQCLKEHEKIHSGDKYKCKECDYTTLWKQNLKQHEEIHTAHEYKCEECDYKTRLKRSIKEHEKIHTGDEYQCTECDYKTQQKRSIKEHEKIHTGDEYKCKECKYRTLWKQNLKRHEKTHTDTEYKCNECNYTTVQKHTLQKHMKTHTSKEYKCKECDYKTVWRRCLKDHARKHVKIHIDEEYKCRECDYKTPWKPSLKGHEKIHTGDEYKCNECDYKTKWKQCLKAHEKIHSGDKYKCKECDYTTLWKQNLKQHEEIHTAHEYKCEECDYKTRLKRSIKEHKKIHTGIEYKARQKRSVKELVKMLAGNEYKCKECKYRTLWKQNLKRHEKTHTDTEYKCNECNYTTVQKHTLQKHMKTHTSKEYKCTECDYKTVWRRCLKNHARKHVKIHIDEEYKCKECDYKTPWKPSLMGHEKIHTGDEYKCNQCDYKTKWKQCLKAHEKVHTGDEYKCKECDYTTLWKQNLKSHEKIHTGDEYKCEECDYKTQQKRSIKEHKIIHTGNKYKCAECDYKTPQKQNLKQHARKHVKIHIDDEYKCEESDDKILFDEEYKGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-