Lyun005069.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- ZNF407
- Assembly
- GCA_013368075.1
- Location
- JABVZV010000868.1:6187784-6249580[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.2 32 5.4 1.4 1 11 273 285 273 294 0.85 2 11 0.00075 0.011 16.3 2.1 1 23 333 357 333 357 0.98 3 11 0.00075 0.011 16.3 2.1 1 23 392 416 392 416 0.98 4 11 7.6e-05 0.0011 19.4 7.7 1 23 427 449 427 449 0.98 5 11 0.0012 0.017 15.7 1.8 1 23 455 479 455 479 0.98 6 11 7.6e-05 0.0011 19.4 7.7 1 23 489 511 489 511 0.98 7 11 0.0012 0.017 15.7 1.8 1 23 517 541 517 541 0.98 8 11 7.6e-05 0.0011 19.4 7.7 1 23 551 573 551 573 0.98 9 11 0.0012 0.017 15.7 1.8 1 23 579 603 579 603 0.98 10 11 7.6e-05 0.0011 19.4 7.7 1 23 614 636 614 636 0.98 11 11 0.44 6.2 7.6 0.2 1 17 642 660 642 661 0.93
Sequence Information
- Coding Sequence
- atgaatgaaaTTAAAGCTGAAGACCAAACACTTACTTACGTCGCGCTtgaaaatgtacaatttaataatatgtcCTTCGAAGTAGCACACCAAGAACAAATTAATGATCTCTGCCGCACCTGCCTAACCAGTGCCACAAGTTTTCAATCAATTTTCGAAACAAACTTAAACAAAATGGCAATGGAATTAACTTCAGTTcagATTACACAGGGTGACGGGTTACCCTCTAAGATCTGTTCAGATTGTGTTCTTCAGATAAAGCAAGCGTATATATTTAAACAACGAGTAGAAAATTCAGATAATATTTTAAGACAACATTGTCTATATATAGAAAGAGTAGAAGATGTTGATGAACCAAAGAATAGATATTCAGAAGTAAACTATGAACAACCATCAAAAGTAACTAATTTTGGATGGGACTGTAATGAATTATTAAGCATTCAGTTAGATAGTGATGATGAAGTCGTAAATGATTTCTCAGAGGACAACTGTAATAGCGatattgaaaatgaagaaaaagatattttgaaaaccattgAGTCTTCAATTAATACTAAAGAAGACggaaataatattgaaaatgaaaacttaagagatACAGGATCAAAAGAATGTGACATAGACTACATCCCTTCCAGAAATGACAGTGCGATAGCAGGTAGTGCTGATATTGTTAAAACTGAATCACCAACACAGTATCAATCTAATGTATCCACAGGGCATAGGCCAATCACTACAGgCAACAATCGAATGAAGAATGCAAGATCATGTCTGCCTAGCTTAAAACATATGAAAGCTCACACTGGTGCAAAACCATATCAATGTGAGTTTACCAATTGTGGCAAGAGTTTTAAGTGTATCGGTGACTTAATTGGGCATAAATGGGTTCGTCATAtagAACGAAGAGTGGAGATATCATTGAAAAACGTGTGTGGTATTTATGAGACGAAATGGCCTTCTCAAAGTCACATGCGAACTTACACTGGAGAAAAACCGTACAAGTGTGACATTTCTGACTGCAGTAGGGCTTTTACAACTATGGGTCACCTTAATgtacataaaaagaaacatGAAGAACGAAGAGTGGAGATATCATTGAAAAACGTGTGTGGTATTTATGAGACGAAATGGCCTTCTCAAAGTCATATGCGAACTTACACTGGAGAAAAACCGTACAAGTGTGACATTTCTGACTGCAGTAGGGCTTTTACAACTATGGGTCACCTTAATgtacataaaaagaaacatGAAGGACAAGGAGTGAAGAAACAGCTACAACATGTGTGTTGTGTTTGTGGAAAGAAATGCCCTTCTCAAAGTCACTTAACAGCTCACATGAGAACCCACACTGGAGAAAAACCATACAAGTGTGACATTTCTGGCTGCAGTAGGGCTTTTACAACTATGGGTCACCTTAATgtacataaaaagaaacatGAAGGACAAGGAGTGATGAAACAACTACATGTGTGTTGCGTTTGTGGAAAGAAATGTCCTTCTCAAAGTCACTTAACAGCTCACATGAGAACTCACACTGGAGAAAAACCATACAAGTGTGACATTTCTGGCTGCAGTAGGGCTTTTACAACTATGGGTCATCTTAATGTACACAAAAAGAAACATGAAGGACAAGGAGTGATGAAACAACTACATGTGTGTTGCGTTTGTGGAAAGAAATGTCCTTCTCAAAGTCACTTAACAGCTCACATGAGAACTCACACTGGAGAAAAACCATACAAGTGTGACATTTCTGGCTGCAGTAGGGCTTTTACAACTATGGGTCATCTTAATGTACACAAAAAGAAACATGAAGGACAAggaataaagaaacaactacaaCATGTGTGTTGTGTTTGTGGGAAGAAATGCCCTTCTCAAAGTCACTTAACAGCTCACATGAGAACCCACACTGGAGAAAAACCATACAAGTGTGACATTTCTGGCTGCACTAGGAGTTTTGCAAGTATTAGTAACCTCAgtCATTTCATATATGTAATACAAGTAAAAATGGAATATGAGGGTGTTGATGTTTCATTGCTCACACTTAACAGAAACATACTATCATTTAAAGAACTTCCTTATGAACTGATTAATCTGGTTTGTCGAATTTGTCTTGCAAAATCAAGTTTCGAATCAATATTTGCAGGGAATCATATCGAAATGATTACGGCATTTACAACAGTGAAGATTTCTAAGGGAGATGGGTTACCTTCTCAAATTTGTTCCGACTGCATTGTTAAGATAAAACAggcatacatttttaaaaaactagtagaaaaatgtgattttgttttaaagcaACGTTATTTATTGTATAATGCGACAATGAGTActgataaatcaataaaatcatCAGTTGACTTAAAACAATCGCTACATGAAGATTCGGAACATGATTATAATCTGGTAGGTAAATGTTCTGAGGATGAATATAGAGaaccaataaaaaatgatttagagGATGACTGCGATATTGaaatagtAAAACACGAAATCAAGGAGGAAGTCAATGTTATTGATCCTGCAATAAATATTGAAGAAGTTCAAAATAGTGAAACCAGTGAACACTTAAAAGGCAatgtCGATAATCTTTTGGATGTGTCTGTATGTGATATAAACTCAAAACAACGTGACTTAAATTACATTCCTTCCAATGACTATAGGTCTAGTAAGAGAGGACATGATGATTTTAATAATTCTGAATTATCACCACAACCTGATGTTTCCACAGAGAAAAGGATAATAGGAACAGGTAAATTTAGTTAA
- Protein Sequence
- MNEIKAEDQTLTYVALENVQFNNMSFEVAHQEQINDLCRTCLTSATSFQSIFETNLNKMAMELTSVQITQGDGLPSKICSDCVLQIKQAYIFKQRVENSDNILRQHCLYIERVEDVDEPKNRYSEVNYEQPSKVTNFGWDCNELLSIQLDSDDEVVNDFSEDNCNSDIENEEKDILKTIESSINTKEDGNNIENENLRDTGSKECDIDYIPSRNDSAIAGSADIVKTESPTQYQSNVSTGHRPITTGNNRMKNARSCLPSLKHMKAHTGAKPYQCEFTNCGKSFKCIGDLIGHKWVRHIERRVEISLKNVCGIYETKWPSQSHMRTYTGEKPYKCDISDCSRAFTTMGHLNVHKKKHEERRVEISLKNVCGIYETKWPSQSHMRTYTGEKPYKCDISDCSRAFTTMGHLNVHKKKHEGQGVKKQLQHVCCVCGKKCPSQSHLTAHMRTHTGEKPYKCDISGCSRAFTTMGHLNVHKKKHEGQGVMKQLHVCCVCGKKCPSQSHLTAHMRTHTGEKPYKCDISGCSRAFTTMGHLNVHKKKHEGQGVMKQLHVCCVCGKKCPSQSHLTAHMRTHTGEKPYKCDISGCSRAFTTMGHLNVHKKKHEGQGIKKQLQHVCCVCGKKCPSQSHLTAHMRTHTGEKPYKCDISGCTRSFASISNLSHFIYVIQVKMEYEGVDVSLLTLNRNILSFKELPYELINLVCRICLAKSSFESIFAGNHIEMITAFTTVKISKGDGLPSQICSDCIVKIKQAYIFKKLVEKCDFVLKQRYLLYNATMSTDKSIKSSVDLKQSLHEDSEHDYNLVGKCSEDEYREPIKNDLEDDCDIEIVKHEIKEEVNVIDPAINIEEVQNSETSEHLKGNVDNLLDVSVCDINSKQRDLNYIPSNDYRSSKRGHDDFNNSELSPQPDVSTEKRIIGTGKFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -