Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010002124.1:99896-101790[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0027 0.039 14.5 1.2 2 23 139 160 138 160 0.97

2 11 0.00026 0.0037 17.7 5.6 1 23 166 188 166 188 0.98

3 11 0.00039 0.0056 17.2 4.9 1 23 194 216 194 216 0.99

4 11 0.35 4.9 7.9 0.5 2 23 229 250 228 250 0.96

5 11 0.0008 0.011 16.2 4.8 1 23 279 301 279 301 0.99

6 11 0.0005 0.0071 16.9 1.3 1 23 306 328 306 328 0.98

7 11 0.0011 0.016 15.7 6.1 1 23 334 356 334 356 0.99

8 11 0.21 3 8.6 0.3 3 23 364 384 362 384 0.98

9 11 0.0065 0.093 13.3 3.9 1 23 431 453 431 453 0.96

10 11 0.0038 0.054 14.1 1.1 1 23 481 503 481 503 0.97

11 11 5.9e-05 0.00084 19.8 2.4 1 23 509 531 509 531 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0027	0.039	14.5	1.2	2	23	139	160	138	160	0.97
2	11	0.00026	0.0037	17.7	5.6	1	23	166	188	166	188	0.98
3	11	0.00039	0.0056	17.2	4.9	1	23	194	216	194	216	0.99
4	11	0.35	4.9	7.9	0.5	2	23	229	250	228	250	0.96
5	11	0.0008	0.011	16.2	4.8	1	23	279	301	279	301	0.99
6	11	0.0005	0.0071	16.9	1.3	1	23	306	328	306	328	0.98
7	11	0.0011	0.016	15.7	6.1	1	23	334	356	334	356	0.99
8	11	0.21	3	8.6	0.3	3	23	364	384	362	384	0.98
9	11	0.0065	0.093	13.3	3.9	1	23	431	453	431	453	0.96
10	11	0.0038	0.054	14.1	1.1	1	23	481	503	481	503	0.97
11	11	5.9e-05	0.00084	19.8	2.4	1	23	509	531	509	531	0.99

Sequence Information

Coding Sequence: ATGGATTATTACGATTACGATATGATTAACTCGGTGAACGTGTCGCAGGTGGAGGCCGATTTTAATCTGAGCGAAGACGAGGATTCATTGAAGGAGCCCAAAAAGTTTTATACTCTAACTAACTTTGTGGACAGCTTTGATGTAAAACCCGAGACCAATGGTGAGTCTCATGTACTGCCATCAACTGACATACCCATAGCTATTATTGAGACCCAATCAAATGATATCGACACGGAGGACGACAACAATGAGGAGTTCATTACTCTGAATAAGTCAGTCGAAACTGCATACGTGGTCGAGACATATGCAAATGATCTTGATGTGCAAAGCAAGAGGCCACCCAGCCCCGAGTACGTTGCCGAAACACATTTAGAAGTCAACACGCTAATGGAGATTGAGGTGAAGATACCATTAAAATGTAAGGATtgtaattttacaacgtttaaCGACGACGATTTAAAATTACACATGAAGGTCCATGTGCCGCCGACGTTATTCTCTTGTAAGGTTTGCGGACATCTTTTCAAACATAGTTATAGTGTAAAGCGTCACATGCGAATACATAATAAAGAGGCCGCTTATAAATGTACCGAGTGTGATTACACCTGCCAACGTAGTGAGTATCTAAAGGCACATAAGAAAACGCACGGGGAGTCGAACGGTCTAACCACAAGTGTACCACTTAAGTGCAAAGCTTGTCCTTTCACCACCGACAACAAAGTCCTTTTTAAATCCCACTTAGATATACATACCAAAGAGCAGCCGAAAGGGGATGAATGTGATTCTAGTGccactaaattattattagGTTTGAGTGATAATGAAGAGAAAACatataaatgtaacgaatgTAGCTTTTCGTCAACGAAGCTCGTGCACCTGAAGACGCACATGAGGAAGCACAACGATGTGCCATTTAAGTGCAAGTTGTGTGATTACACCACAGCCAAGAAAGGCAACTTTGTTGTACACTTACGCAATCACACAGGAGAGAAACCTTATAAATGCGCCATGTGTGGCTTCACATGTAAGCAATTCATACACCTAAAGCGCCACATACGGAATCACAATAAAGACGATCTCTTTGGATGCAGCAAATGTGATTATAGAACTGGCGAGGGCAAGGAACTCGAAACCCACATTAAAACGCACGGCGGCCTCGAGCAAGCTTTTTTGGATGAGCTGCAATATGAGACCCCTGACGAGAGCTCTGACACTCACTCGAACTCCTCTGATATGCTCTTTGTAGAGAACACAACGCCACGAAAGAAATGCACcaaaacaaagttacataaatgCATTTACTGCGATTACATGACAAACCAAACTGGTAATTTGAAACGTCATCAAAAGACCCACTTCAAGGAGGCACCAGAAAAGCCTTCCAATGACGTTGAAGTTTCTAAACCAATCAGCGTCAATGCCttatttgaaaaggtttttgaCTGTCCCGAATGTCCTTTTAAAGCGTCACGCAAACACCAGATGGACATTCACATGCGTAGCCATAATGGGAAGCAACTGTATGAGTGCAATTTGTGTGATTACAAAACtgtgaataaatttaatttgtcaaGACACCAAAAAACACACACGTTTGGCGAATCCAATGGAGGAATGAGTCAACTTGCTGGCCATCTTAGTACTGAGCTTGCTGAATCGGACAcactaacttaa
Protein Sequence: MDYYDYDMINSVNVSQVEADFNLSEDEDSLKEPKKFYTLTNFVDSFDVKPETNGESHVLPSTDIPIAIIETQSNDIDTEDDNNEEFITLNKSVETAYVVETYANDLDVQSKRPPSPEYVAETHLEVNTLMEIEVKIPLKCKDCNFTTFNDDDLKLHMKVHVPPTLFSCKVCGHLFKHSYSVKRHMRIHNKEAAYKCTECDYTCQRSEYLKAHKKTHGESNGLTTSVPLKCKACPFTTDNKVLFKSHLDIHTKEQPKGDECDSSATKLLLGLSDNEEKTYKCNECSFSSTKLVHLKTHMRKHNDVPFKCKLCDYTTAKKGNFVVHLRNHTGEKPYKCAMCGFTCKQFIHLKRHIRNHNKDDLFGCSKCDYRTGEGKELETHIKTHGGLEQAFLDELQYETPDESSDTHSNSSDMLFVENTTPRKKCTKTKLHKCIYCDYMTNQTGNLKRHQKTHFKEAPEKPSNDVEVSKPISVNALFEKVFDCPECPFKASRKHQMDIHMRSHNGKQLYECNLCDYKTVNKFNLSRHQKTHTFGESNGGMSQLAGHLSTELAESDTLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -