Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010000380.1:1198746-1200788[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.065 0.92 10.2 0.4 1 23 94 116 94 116 0.98

2 18 0.0056 0.079 13.6 1.1 1 23 148 170 148 170 0.98

3 18 1.9 27 5.6 4.9 1 23 175 197 175 197 0.97

4 18 0.4 5.7 7.7 3.2 1 23 202 224 202 224 0.98

5 18 1.5 21 5.9 0.3 9 23 237 251 235 251 0.88

6 18 0.0018 0.025 15.2 0.9 1 23 256 278 256 278 0.99

7 18 0.0018 0.025 15.2 0.9 1 23 337 359 337 359 0.99

8 18 1.1 15 6.4 0.6 1 22 364 385 364 385 0.88

9 18 0.0073 0.1 13.2 1.9 1 23 391 413 391 413 0.97

10 18 0.15 2.1 9.1 1.5 1 23 418 440 418 440 0.98

11 18 0.0016 0.022 15.3 4.0 1 23 445 467 445 467 0.98

12 18 0.00021 0.003 18.0 2.4 1 23 472 494 472 494 0.99

13 18 0.02 0.28 11.8 1.4 1 23 499 521 499 521 0.98

14 18 0.0019 0.026 15.1 4.5 1 23 526 548 526 548 0.99

15 18 0.084 1.2 9.9 3.2 1 23 553 575 553 575 0.98

16 18 0.0087 0.12 13.0 0.8 1 23 580 602 580 602 0.98

17 18 0.11 1.5 9.5 1.2 1 23 607 629 607 629 0.98

18 18 0.018 0.26 11.9 0.8 1 23 634 656 634 656 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.065	0.92	10.2	0.4	1	23	94	116	94	116	0.98
2	18	0.0056	0.079	13.6	1.1	1	23	148	170	148	170	0.98
3	18	1.9	27	5.6	4.9	1	23	175	197	175	197	0.97
4	18	0.4	5.7	7.7	3.2	1	23	202	224	202	224	0.98
5	18	1.5	21	5.9	0.3	9	23	237	251	235	251	0.88
6	18	0.0018	0.025	15.2	0.9	1	23	256	278	256	278	0.99
7	18	0.0018	0.025	15.2	0.9	1	23	337	359	337	359	0.99
8	18	1.1	15	6.4	0.6	1	22	364	385	364	385	0.88
9	18	0.0073	0.1	13.2	1.9	1	23	391	413	391	413	0.97
10	18	0.15	2.1	9.1	1.5	1	23	418	440	418	440	0.98
11	18	0.0016	0.022	15.3	4.0	1	23	445	467	445	467	0.98
12	18	0.00021	0.003	18.0	2.4	1	23	472	494	472	494	0.99
13	18	0.02	0.28	11.8	1.4	1	23	499	521	499	521	0.98
14	18	0.0019	0.026	15.1	4.5	1	23	526	548	526	548	0.99
15	18	0.084	1.2	9.9	3.2	1	23	553	575	553	575	0.98
16	18	0.0087	0.12	13.0	0.8	1	23	580	602	580	602	0.98
17	18	0.11	1.5	9.5	1.2	1	23	607	629	607	629	0.98
18	18	0.018	0.26	11.9	0.8	1	23	634	656	634	656	0.98

Sequence Information

Coding Sequence: ATGGATATCCACTCATTAgactttattgaaagttgttctataaaatcagaagtgattttaacagagacattttctttttgtgggaagTACGAAGatTGTGGGAGTAACGAACTGAAAACGGAGCCAGTAAATTACGAAGAATCGTTTAAacgtaaagaagaaaatgatctgGCAAAACCCATAGATACACATGCTGCTCTGATGCAACAAGATTTTTGTGATCACTCTAATTTTACAACAATCGGAGAAACTCAAATAGAACTTACTAAAAACCTTAAATACTCTTGTAAGGTATGTAACTTTACAACCCAGTTAGAAAGTTCTATAGAAGAGCATATGAGGATACACAATGACAgatataatattgaagaatgtaatattaAGATGCCACAGATTTTCTCTCTATCATCCCAGTTTAACACTCCAAGAAGTGCGAatgaatatatttgtaatgaatgtaattacaccacattgAACAAAGATTATCTAAGGAAACATGTAAAGATTCACAAAGGCACTTCATATAGTTGcgagaaatgtgattataatacacGGTGGAAACATCACTTCACAGCACATGCAAAACTTCATTCTGGTAATGAATACAAGTGtcaaaaatgtgattataaaacagtgtcaAAAATTCGTATAaagaaacatttcaaaattcatacaggtgaagaatataagtttAAAGAATCTGATTATAAAACCGTACGAAAAAGTCAGCTAAATCAACATGTCAAAagtcatacaggtgaagaatataagtgtaatgaatgtgattataaaacaatatggaaaagtaatctaacacaacatgtcaaaattcatactggtaacaaatataagtataaagaaagtaattataaaacaggGTGGAAAACacatctaaagcaacatgtcaaaattcatacaggtgaaggatataaatgtaaagaacgGGATTATAAGACAATAGTgaaaagtgatctaatgcaacatgtcaaaattcatacaggtgaagaatataagtgtaatgaatgtgattataaaacaatatggaaaagtaatctaacgcaacatgtcaaaattcatactggtaacaaatataagtgtaaagaatgtaattataaaacagtgtggaaaacaCTTTTAAAGGGACATGTCAAAACTcgtacaggtgaagaatatacgtgtaaagaatgtgattataaaacgctacggaaaagttatctaatgcaacatgtcaaaatccatactggcgatgaatataagtgtaaacaatgtaattataaaacggtgtggaaaacacttctaaaggaacatgtcaaaattcatacaggtgatgaacacaagtgtaaacaatgtgattataaaacaatacggaaaagttatctaatgcaacatgttaaaattcatacaggtgatgaatataagtgtaaacaatgtgattataaaacaatacggaaaagttatctaatgcaacatgtcaaaattcatacaggtgatgaatataagtgtaaaaaatgcgattataaaacaatttggaaaagttatctaatacaacatgtcaaaattcatacaggcgatgaatataagtgtaaacaatgtgattataaaacgatacGGAAAAGTTGTCttatgcaacatgtcaaaattcatactggtgatgaatataagtgtaaacaatgtgattataaaacagtgtggaaaacacatctaaaggaacatgttaaaattcatacaggtgaagaatataagtgtaatgaatgtgattataaaacagtatggaaaaataacctaaacagccatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatgtggAAAACAAATCTAAAGgggcatgtcaaaattcatacaggtgaagaatatcagtgtaaacaatgtgattataaaacagtatgggaaaataatctaaacagacatgtcaaaattcacacaagTTCATGTAGATGA
Protein Sequence: MDIHSLDFIESCSIKSEVILTETFSFCGKYEDCGSNELKTEPVNYEESFKRKEENDLAKPIDTHAALMQQDFCDHSNFTTIGETQIELTKNLKYSCKVCNFTTQLESSIEEHMRIHNDRYNIEECNIKMPQIFSLSSQFNTPRSANEYICNECNYTTLNKDYLRKHVKIHKGTSYSCEKCDYNTRWKHHFTAHAKLHSGNEYKCQKCDYKTVSKIRIKKHFKIHTGEEYKFKESDYKTVRKSQLNQHVKSHTGEEYKCNECDYKTIWKSNLTQHVKIHTGNKYKYKESNYKTGWKTHLKQHVKIHTGEGYKCKERDYKTIVKSDLMQHVKIHTGEEYKCNECDYKTIWKSNLTQHVKIHTGNKYKCKECNYKTVWKTLLKGHVKTRTGEEYTCKECDYKTLRKSYLMQHVKIHTGDEYKCKQCNYKTVWKTLLKEHVKIHTGDEHKCKQCDYKTIRKSYLMQHVKIHTGDEYKCKQCDYKTIRKSYLMQHVKIHTGDEYKCKKCDYKTIWKSYLIQHVKIHTGDEYKCKQCDYKTIRKSCLMQHVKIHTGDEYKCKQCDYKTVWKTHLKEHVKIHTGEEYKCNECDYKTVWKNNLNSHVKIHTGDEYKCKECDYKTMWKTNLKGHVKIHTGEEYQCKQCDYKTVWENNLNRHVKIHTSSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -