Lyun015766.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002186.1:1712768-1723210[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.015 0.21 12.3 0.1 1 20 68 87 68 89 0.95
2 19 0.00049 0.007 16.9 3.4 1 23 163 185 163 185 0.98
3 19 3.1 45 4.9 2.1 1 23 190 212 190 212 0.97
4 19 0.006 0.084 13.5 1.0 1 23 217 239 217 239 0.98
5 19 0.03 0.43 11.3 2.1 1 23 244 266 244 266 0.97
6 19 0.067 0.95 10.2 0.9 1 23 271 293 271 293 0.98
7 19 5.9 84 4.1 4.8 1 23 298 320 298 320 0.96
8 19 0.015 0.21 12.2 2.4 1 23 325 347 325 347 0.97
9 19 0.16 2.3 9.0 2.5 1 23 352 374 352 374 0.98
10 19 0.089 1.3 9.8 0.9 1 23 379 401 379 401 0.98
11 19 0.0011 0.015 15.8 0.7 2 23 407 428 406 428 0.97
12 19 0.017 0.24 12.0 1.0 1 23 433 455 433 455 0.99
13 19 0.014 0.21 12.3 4.9 1 23 460 482 460 482 0.98
14 19 0.0092 0.13 12.9 3.2 1 23 487 509 487 509 0.99
15 19 0.0097 0.14 12.8 0.6 1 23 514 536 514 536 0.98
16 19 0.16 2.3 9.0 2.5 1 23 541 563 541 563 0.98
17 19 0.089 1.3 9.8 0.9 1 23 568 590 568 590 0.98
18 19 0.0011 0.015 15.8 0.7 2 23 596 617 595 617 0.97
19 19 0.017 0.24 12.0 1.0 1 23 622 644 622 644 0.99

Sequence Information

Coding Sequence
ATGGATATTGATTATAATCAAAGTTACCGGATGAAATCAGAGGTAACTCTACAGCAAACATTTTCGTATTGTGGAAATTATAAAGATGATGTGAATGGAGAATTGAAAACAGACCTGATAAAGATAgaaaaaccctttaaatgcgaAGACGAGGATAATCTAGGACAGCTCGCCGATGTATGTGTTGTACCCATACATCAATATagttgtaatgaatgtaattttgttacaaCAGAGAAAGATTCTTTAATACAACACTTgaccattattaaaaatgtttactatttttgtaaagaatgtacTTTCAAAACCCTGTTTGGGTGTTCAATAAAAGACCATTTTAGGATTCATAACAGGGTTGGCTGTAAACATATgactaaaaaatgtaatttcaaaagTCCACAAATTTTCTATTTAGCACCATTAAGTGGTATCAAACTTATTTGTAAGGAAAGtgtttgtaaaacaaaacaaaaagcgaatgaatataagtgtcaggaatgcgattataaaactgtaaggaAATATTGTCTAAGGGAACATATGttaattcatactggtgatgaatataagtgtaaggcatgtgattttaaaacacaatggaaacagagtctaaagacacatttaaaaattcataccggtgataaatttaagtgtaaagaatgtgattataaaacaccatggaaaaataatctaaaggtacatttaaaaattcatactggtgatgaacataagtgtaaggaatgtgattataaaacactaagGGAAgattatctaaaggaacatatgttaattcatactggtgatgaatataagtgtcaacaatgtgattataaaacaccatggaaaaataatctaaagggacatttaaaaattcatactggcgaagaatataagtgtaatgaatgtgagtataaaacactatggaaacataatctaaagacacatttaaaaattcatactggtgatgaacataagtgtaaggaatgtgattataaaacactaagGGAAGATTCTCTAAAGCAACATATGttaattcatactggtgataaatataagtgcaaggactgtgattttaaaacacaatggaaacagagtctaaagacacatttaaaaattcatactggtgatgaatttaagtgtaaagaatgtgattataaaacaccatggaaacagagtctaaagggacatttaaaaattcataatggtGATGAAATtaagtgtacagaatgtgattataaaacacaaaggGAAGAttatctaaagcaacatatgttaattcataatggtgataaatataagtgcaaGGACTGTGATTTTAAAACGCCATGGAAAAATCAGCTAaaggtacatttaaaaattcatagtggcgaagaatataagtgtaagcaatgtgattataaaacactaaggaaaaatcatctaaagcaacatatgTTAATTCACACTggcgaagaatataagtgtaaagaatgtgattataaaacaccatggaaacacaatctaaagacacatttaaaaattcatactggcgaagaatataagtgtaaagaatgtgattataaaacaccatggaaaaataatctaaagggACATATGttaattcatactggtgataaatataagtgcaaggactgtgattttaaaacacaatggaaacagagtctaaagacacatttaaaaattcatactggtgatgaatttaagtgtaaagaatgtgattataaaacaccatggaaacagagtctaaagggacatttaaaaattcataatggtGATGAAATtaagtgtacagaatgtgattataaaacacaaaggGAAGAttatctaaagcaacatatgttaattcataatggtgataaatataagtgcaaGGACTGTGATTTTAAAACGCCATGGAAAAATCAGCTAaaggtacatttaaaaattcatagtggcgaagaatataagttTACGTTTGCAAATTCAAAGTTGAATGGAATTTTAATGTTAGCCATTGATGACGATGTCCCTAATATGCTCAATGCAATTAACCATTTTGCTGAAGGTTTAATGCAACCCTTAGACTTACTCGAAGCCAATCCTGACGAACTTCGTGAAAGGATTCCATTAGCTCGAAATGAACATTTCTTTGAATAA
Protein Sequence
MDIDYNQSYRMKSEVTLQQTFSYCGNYKDDVNGELKTDLIKIEKPFKCEDEDNLGQLADVCVVPIHQYSCNECNFVTTEKDSLIQHLTIIKNVYYFCKECTFKTLFGCSIKDHFRIHNRVGCKHMTKKCNFKSPQIFYLAPLSGIKLICKESVCKTKQKANEYKCQECDYKTVRKYCLREHMLIHTGDEYKCKACDFKTQWKQSLKTHLKIHTGDKFKCKECDYKTPWKNNLKVHLKIHTGDEHKCKECDYKTLREDYLKEHMLIHTGDEYKCQQCDYKTPWKNNLKGHLKIHTGEEYKCNECEYKTLWKHNLKTHLKIHTGDEHKCKECDYKTLREDSLKQHMLIHTGDKYKCKDCDFKTQWKQSLKTHLKIHTGDEFKCKECDYKTPWKQSLKGHLKIHNGDEIKCTECDYKTQREDYLKQHMLIHNGDKYKCKDCDFKTPWKNQLKVHLKIHSGEEYKCKQCDYKTLRKNHLKQHMLIHTGEEYKCKECDYKTPWKHNLKTHLKIHTGEEYKCKECDYKTPWKNNLKGHMLIHTGDKYKCKDCDFKTQWKQSLKTHLKIHTGDEFKCKECDYKTPWKQSLKGHLKIHNGDEIKCTECDYKTQREDYLKQHMLIHNGDKYKCKDCDFKTPWKNQLKVHLKIHSGEEYKFTFANSKLNGILMLAIDDDVPNMLNAINHFAEGLMQPLDLLEANPDELRERIPLARNEHFFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-