Lyun008851.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010001556.1:726256-727650[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.17 2.4 8.9 0.0 1 21 70 90 70 91 0.94 2 11 0.17 2.3 8.9 1.8 1 23 153 175 153 175 0.98 3 11 6.9e-05 0.00097 19.6 2.5 1 23 207 229 207 229 0.99 4 11 0.0046 0.066 13.8 0.7 1 23 234 256 234 256 0.97 5 11 0.00047 0.0066 17.0 1.4 1 23 261 283 261 283 0.98 6 11 0.0015 0.021 15.4 0.7 1 23 288 310 288 310 0.98 7 11 0.00014 0.002 18.6 0.7 1 23 315 337 315 337 0.98 8 11 0.0022 0.031 14.9 1.2 1 23 342 364 342 364 0.98 9 11 1.7e-06 2.4e-05 24.7 2.1 1 23 369 391 369 391 0.99 10 11 0.0034 0.048 14.2 0.6 1 23 396 418 396 418 0.98 11 11 0.16 2.2 9.0 4.3 1 23 423 445 423 445 0.99
Sequence Information
- Coding Sequence
- atggTTGTTGATTATATTGAAAGTTGTGGAGTAGAAGTAAAATCTGAAATCATTTTGACTgaaacgtttttgttttgtgaacaaTACGGACGTTATAGGGACGAAGAACTAAAAACAGAGccaataaattacaaagaatCTATTAAATGTAAGGACGAAGATATTACTGTAGATCACATGGGCGTGCATTCTGCGTTGCTGCAACAATTTGCTTGTAATGAGTGTGACTTTATGACTATGGAAAAAGATTCCCTAATAGAACACCTGAAAATctctaaaaatattcaatatttttgtaaggagtGTAACTTTACAACCCAGTTCCCGTGTTCTGTAAAAAAGCATTTTGAAATTCATAATGTGGTAGATGATAAAcatattgaaaaatgtaattttcagaCGTCACAAATTTTCAGTTTCACACCACAGTGGAAAACTCAAAAAAGTGGTGACAAATATACTTGtagtgaatgtaattataccacattAATCAAAAGATATCTAagaaaacatgtcaaaattcataaaggggccgaatataagtgtaaaaaatttgactttaaaacagtgcgaaaaaattgtctaaatcaacatattaaaattcatacaagtgacgaatataagtgtaaaaaatgtgactataaaacagtgagaaaaaattccctaaaggaacacatcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacggtgtggcaaagtaatctaaagacacatgaagaaattcatataggtgacaaatatgaatgtaaagaatgtgactttaaaacagtgagaaaaaattatctaaatcaacatgtcaaaattcatacagtcgACAAATAtgtgtgtaaagaatgtgattataaaacagtgtggcaaagtaatctaaagaaacatgaaaaaattcatgcGGGtaacaaatatgagtgtaaagaatgtgactataaaacagtgagaaaaaattctctaattcaacatgtcaaaattcatacaggtgacaaatataagtgtaaagaatgtgattataaaacagtttggcaaagtaatctaaagacacatgaaaaaattcatgtgggtaacaaatataaatgtaaggaatgtgactataaaacagtacgaaaagataatctaaagaaacatatcaaaattcatataggtgacaaatataagtgtaaagaatgtgattataaaacagcatggcaaagtagtctaaaggaacatgtcaaaattcatacaggcgaggaatataagtgtaaagaatgtaactataaaacaccatggaagtgTTCTCTAAAATTGCATATCAAAAGACATAGGTGA
- Protein Sequence
- MVVDYIESCGVEVKSEIILTETFLFCEQYGRYRDEELKTEPINYKESIKCKDEDITVDHMGVHSALLQQFACNECDFMTMEKDSLIEHLKISKNIQYFCKECNFTTQFPCSVKKHFEIHNVVDDKHIEKCNFQTSQIFSFTPQWKTQKSGDKYTCSECNYTTLIKRYLRKHVKIHKGAEYKCKKFDFKTVRKNCLNQHIKIHTSDEYKCKKCDYKTVRKNSLKEHIKIHTGDEYKCKECDYKTVWQSNLKTHEEIHIGDKYECKECDFKTVRKNYLNQHVKIHTVDKYVCKECDYKTVWQSNLKKHEKIHAGNKYECKECDYKTVRKNSLIQHVKIHTGDKYKCKECDYKTVWQSNLKTHEKIHVGNKYKCKECDYKTVRKDNLKKHIKIHIGDKYKCKECDYKTAWQSSLKEHVKIHTGEEYKCKECNYKTPWKCSLKLHIKRHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -