Lyun004862.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000835.1:813319-815726[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.15 2.1 9.1 1.0 1 21 66 86 66 87 0.95
2 22 4.3e-05 0.0006 20.2 2.1 1 23 161 183 161 183 0.99
3 22 0.51 7.3 7.4 2.2 1 23 188 210 188 210 0.96
4 22 6.8 96 3.9 0.6 1 23 215 237 215 237 0.80
5 22 0.002 0.029 15.0 2.1 1 23 242 264 242 264 0.98
6 22 0.093 1.3 9.7 0.5 1 23 296 318 296 318 0.98
7 22 0.15 2.1 9.1 0.9 1 23 350 372 350 372 0.97
8 22 0.92 13 6.6 1.1 1 23 377 399 377 399 0.93
9 22 0.11 1.5 9.5 0.6 1 23 404 426 404 426 0.98
10 22 2.2e-05 0.00032 21.1 2.1 1 23 431 453 431 453 0.99
11 22 9 1.3e+02 3.5 3.1 1 23 458 480 458 480 0.87
12 22 0.1 1.4 9.6 0.7 1 23 485 507 485 507 0.98
13 22 0.15 2.1 9.1 0.9 1 23 512 534 512 534 0.97
14 22 0.024 0.34 11.6 3.1 1 23 539 561 539 561 0.98
15 22 5.2 73 4.2 1.8 1 23 566 588 566 588 0.84
16 22 0.15 2.1 9.1 0.9 1 23 593 615 593 615 0.97
17 22 0.46 6.5 7.5 3.0 1 23 620 642 620 642 0.97
18 22 3.7e-05 0.00053 20.4 2.9 1 23 647 669 647 669 0.99
19 22 2.2e-05 0.00032 21.1 2.1 1 23 674 696 674 696 0.99
20 22 0.024 0.34 11.6 3.1 1 23 701 723 701 723 0.98
21 22 3.7e-05 0.00053 20.4 2.9 1 23 728 750 728 750 0.99
22 22 9 1.3e+02 3.5 3.1 1 23 755 777 755 777 0.87

Sequence Information

Coding Sequence
atggatgtcgattataatgaaagtaatccaataaaaacggaagtaattgtaaaagaaacattttcattttgtgaaaaatatgaagATAATGGGAGTGGAGAGTTGAGAACAGAGATGGTAGATTttgaagaatcttttaaatgcgAAGAAGAATATAAGCAGCAGATCAATATACATTATGTAATCGTACCTCAATAtaattgtaatgaatgtaattttattacaactgaAAAAGACTGTCTAACAGatcatttgaaaattactaaaaatgttcaatatttttgtaaggaatgtaactttaaCACCTGGTTGTCATGTTcgataaaagaacattttagGATACATAACAGGGTTGGTTGTAgacatattactaaaaaatgtatctttaaGACACCACAAATTTTCTCCTTGGTACCACAGTTTAATACACCTTTGAGATTGAGGGTAGATGAACATGTGAaagttcatactggtgatgaatataaatgtaaggtatgtaactataaaactgcGAGAAAAGATAGTCTAAACAAAcatctgaaaattcatactggtgttaaatatgagtgtaaggaatgtgattataaaacactctggaaacagaatctaaaggaacacatgaaaattcatactggtgatgaatataagtgtgagggatgtaattacaaaacagtTTGGAAACTGAGATTCATCGAACatctaaaaattcatactggtgatgaatataaatgtaaagaatgtaattataaaacagcgaGAAAAGATTCTATaagaaaacatgaaaaaattcatactggtgataaatataagtgtaaggaatgtgattataaaacgttGTGGAAACAATGTCTAAAgatacatatgaaaattcattctaatgatgaatataagtgtaatgaatgtgattataaaacagtttggaaacaGACACTAatggaacatgtaaaaattcatactggtgatgaatgtaagtgtaaggaatgtgattataaaacgctttggaaacagaatctaaagggacataaaaaaattcataccggtgatgaatataagtgtaaggaatgtgattataaaacagtttggaaacaGAAACTAatggaacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacgctgtggaaacagaatctaaagggacatataaaaattcatagtggtgatgaatataagtgtaaggaatgtgattataaaacagtttggaaatGGAATATAAAGggacatatgaaaattcatactggtgaagaatataagtgtaaagaatgtaactataaaacagtgagaaaagatagtctaaaggaacacatgaaaattcatactggtgttcaatataagtgtaaggaatgtgattataaaacgctgtggaaacagagtctaataGAACATATGAAatttcatactggtgatgaatataagtgtaaggaatgtgattataaaacagtttggaaacaGACACTAatggaacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacagtttggaaacaGAAACTAatggaacatgtaaaaattcatactggtgaagaatataaatgtaaggaatgtcaTTATAAATCAGTTCGGAAACAGAGATTAAtcgaacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacgctgtggaaacagaatctaaagggacataaaaaaattcataccggtgatgaatataagtgtaaggaatgtgattataaaacagtttggaaacaGAAACTAatggaacatgtaaaaattcatactggtgatgaatataagtgtaaggaatgtgattataaaacgctgtggaaacagaatctaaaggaacacatgaaaattcatactggtgatgaatataagtgtaaagaatgtaactataaaacagtgagaaaagatagtctaaagaaacatctcaaaattcatactggtgaagaatataagtgtaaagaatgtaactataaaacagtgagaaaagatagtctaaaggaacacatgaaaattcatactggtgaagaatataaatgtaaggaatgtcaTTATAAATCAGTTCGGAAACAGAGATTAAtcgaacatgtaaaaattcatactggtgatgaatataagtgtaaagaatgtaactataaaacagtgagaaaagatagtctaaagaaacatctcaaaattcatactggtgttcaatataagtgtaaggaatgtgattataaaacgctgtggaaacagagtctaataGAACATATGAAATTTCATACTGTTGAAGAATATAAGTGA
Protein Sequence
MDVDYNESNPIKTEVIVKETFSFCEKYEDNGSGELRTEMVDFEESFKCEEEYKQQINIHYVIVPQYNCNECNFITTEKDCLTDHLKITKNVQYFCKECNFNTWLSCSIKEHFRIHNRVGCRHITKKCIFKTPQIFSLVPQFNTPLRLRVDEHVKVHTGDEYKCKVCNYKTARKDSLNKHLKIHTGVKYECKECDYKTLWKQNLKEHMKIHTGDEYKCEGCNYKTVWKLRFIEHLKIHTGDEYKCKECNYKTARKDSIRKHEKIHTGDKYKCKECDYKTLWKQCLKIHMKIHSNDEYKCNECDYKTVWKQTLMEHVKIHTGDECKCKECDYKTLWKQNLKGHKKIHTGDEYKCKECDYKTVWKQKLMEHVKIHTGDEYKCKECDYKTLWKQNLKGHIKIHSGDEYKCKECDYKTVWKWNIKGHMKIHTGEEYKCKECNYKTVRKDSLKEHMKIHTGVQYKCKECDYKTLWKQSLIEHMKFHTGDEYKCKECDYKTVWKQTLMEHVKIHTGDEYKCKECDYKTVWKQKLMEHVKIHTGEEYKCKECHYKSVRKQRLIEHVKIHTGDEYKCKECDYKTLWKQNLKGHKKIHTGDEYKCKECDYKTVWKQKLMEHVKIHTGDEYKCKECDYKTLWKQNLKEHMKIHTGDEYKCKECNYKTVRKDSLKKHLKIHTGEEYKCKECNYKTVRKDSLKEHMKIHTGEEYKCKECHYKSVRKQRLIEHVKIHTGDEYKCKECNYKTVRKDSLKKHLKIHTGVQYKCKECDYKTLWKQSLIEHMKFHTVEEYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-