Lyun000439.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010000047.1:1741368-1742889[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.063 0.89 10.3 3.6 1 21 67 87 67 88 0.96 2 14 7.4 1e+02 3.7 3.3 3 23 96 116 94 116 0.95 3 14 6.5 92 3.9 1.3 1 21 146 166 146 167 0.91 4 14 0.012 0.17 12.5 3.6 2 23 194 215 193 215 0.97 5 14 0.0045 0.064 13.9 2.2 2 23 221 242 220 242 0.97 6 14 3.8e-05 0.00053 20.4 0.7 2 23 248 269 247 269 0.97 7 14 0.0046 0.065 13.8 4.6 1 23 274 296 274 296 0.99 8 14 0.0025 0.035 14.7 3.1 1 23 301 323 301 323 0.98 9 14 0.005 0.071 13.7 1.2 2 23 329 350 328 350 0.97 10 14 0.012 0.17 12.5 2.9 2 23 356 377 355 377 0.97 11 14 0.00044 0.0062 17.0 1.2 1 23 382 404 382 404 0.99 12 14 0.00037 0.0053 17.3 0.9 1 23 409 431 409 431 0.99 13 14 0.00013 0.0018 18.7 0.9 2 23 437 458 436 458 0.97 14 14 0.005 0.071 13.7 1.2 2 23 464 485 463 485 0.97
Sequence Information
- Coding Sequence
- ATGGATGTTGATCGCAATGAAAGTTGtacaataaaatctgaagtgattttgacggaaacattttctttttgtggagaaTTTGGATATGGgaataaagaattgaaatctGAGCCAGTAGATATCGAAGAATCTTTTAAGTGCAAGAAAGAAGATAACCTTGCAGAGCATATGGATATATCTGCCGGTCCTGTACAGCAATATACTTGTCATGAGTGCAACTTTCAAACAACTGAAAAGGATTGTCTAATTAAACATCTGAAAAGTACTAAAAACATTCAACATTTATGTAAAGAATGCAACTTTAAAACTGTGTTGAAACGTTCCAAGaatgaacatttaagaattcatAATGGAGtagttaataaatgtaattttaaaacacctCAAAGTATCTGTATAACACAACAATTGCAAACTGTACAAAGTGGTGATTACTATATTTGTAAtcaatgtgattttaaaacacaatggaAACATAAACTaaatgtacatataaataaatgtaaggaatgcggatttaaaacagtatggaaatctAATCCTAACAATCATATGAATATTCGCACAGGTGGTAAATTAAAGTGTAAgcaatgtgactataaaactcgtacaaaacatatattaaacgaacatatgagaattcatacaggtgatgaattgaagtgtcaggaatgtgattacaagactCATAGGAAACAATATCTTATTACACATATGATAATTCACGCAGGTGATAAActtaagtgtaaagaatgtgactacaaaactgcTAGGAAACAAAATCTTGACgcacatatgagaattcatacaggtaatgaattcaagtgtaaggaatgtgactacaaaactcataagaaatatgtattaaaagaacatatgagaattcatactggcgatgaatttaagtgtgaagaatgtgactataaatctGTGTGTAAATCTGATCTTAACAAACATATGAAAATACACATAGGTGATgaattgaagtgtaaagaatgtgattataaaactgtgtggaaatTTAATCTTAACAACcacatgaaaattcacacaGATGATAAATTAAAGTGTAAgcaatgtgactacaaaactcctaggaaacatatattaaaagaacatatgaggattcatacaggtgatgaattcaagtgtaatgaatgtgactacaaaactcctaggaaatatatattaaaagaacatatgagaattcatacaggtgatgaatacaagtgtgaggaatgtgactacaaaactcctaggaaatatatattaaaagaacatatgagaattcatacaggtgaggaattgAAGTGTacggaatgtgactacaaaactcctaGGAAACAATCCCTTATtacacatatgaaaattcacgtaggtgataaattgaagtgtaaagaatgtgattataaaactgtgtggaaatTTAATCTTAACaaccatatgaaaattcacacagaTTATAAATGA
- Protein Sequence
- MDVDRNESCTIKSEVILTETFSFCGEFGYGNKELKSEPVDIEESFKCKKEDNLAEHMDISAGPVQQYTCHECNFQTTEKDCLIKHLKSTKNIQHLCKECNFKTVLKRSKNEHLRIHNGVVNKCNFKTPQSICITQQLQTVQSGDYYICNQCDFKTQWKHKLNVHINKCKECGFKTVWKSNPNNHMNIRTGGKLKCKQCDYKTRTKHILNEHMRIHTGDELKCQECDYKTHRKQYLITHMIIHAGDKLKCKECDYKTARKQNLDAHMRIHTGNEFKCKECDYKTHKKYVLKEHMRIHTGDEFKCEECDYKSVCKSDLNKHMKIHIGDELKCKECDYKTVWKFNLNNHMKIHTDDKLKCKQCDYKTPRKHILKEHMRIHTGDEFKCNECDYKTPRKYILKEHMRIHTGDEYKCEECDYKTPRKYILKEHMRIHTGEELKCTECDYKTPRKQSLITHMKIHVGDKLKCKECDYKTVWKFNLNNHMKIHTDYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -