Lyun006153.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010001045.1:2324837-2333788[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.9 83 4.1 2.3 1 23 294 316 294 316 0.90 2 11 0.0078 0.11 13.1 3.4 1 23 397 420 397 420 0.96 3 11 0.032 0.46 11.2 3.2 1 23 426 448 426 448 0.97 4 11 0.00027 0.0039 17.7 0.5 1 23 456 479 456 479 0.92 5 11 3.1e-05 0.00044 20.7 5.4 2 23 486 507 485 507 0.96 6 11 0.00022 0.0032 18.0 1.0 1 20 513 532 513 535 0.93 7 11 0.0012 0.017 15.6 5.2 1 23 541 563 541 563 0.96 8 11 6.3e-05 0.00089 19.7 0.4 1 23 569 591 569 591 0.98 9 11 6.7e-05 0.00095 19.6 7.6 1 23 597 619 597 619 0.98 10 11 0.001 0.014 15.9 0.8 1 23 653 675 653 675 0.98 11 11 5.9e-06 8.4e-05 22.9 2.3 1 23 681 703 681 703 0.98
Sequence Information
- Coding Sequence
- atgGAGGTTGCCAAGCTGTTATGTGACtcatatttttgtagattatgTGCACAAGAAAACAGAAACAGTACCAATTTATTTGTCCACGGAGAAAACGAACAAGATTTAAGTGAACTTGTGAATAAGTATCTGCCCTTAAAGgtggaacgTGATGGTAAATTTCCGATATTAATTTGTCCAGGATGTAATATACAGTTAGAGGcaactaaacaatttttagatttaattattgAGGGACAAAATAAGTTAAGGGACTTGTTTCGAATACAGCAAGATACTCTTCGCAGGCAGGAGAAGCAAAAACTACAGTTAGAAAGTGCTTTGAAAAATGTTAACTCCTCGTCGACCGTTGAAACTTACACAATCGAGGCTGATGAGTCGggtgaaaaatttgttattcaaaTATTTTCGGAAGGACCCCTATTTCCACCTGAACATGAAATGTCGCTGAAAGCAGAAGGTTTAGAACGACCTAAACGTAAACGTGGCAGACCACCAAAACTTCCTGCTTCAGCGGATAATAttgtagaaataaaagaaacattaaACCCAGTAactgaacaagaagaagaagatatagATGATATAGAAAATAGGAGAAAAAGAAAGATTAAAGTACCATCGCGATTTCAAGAAGCTGTGCAGGGAAAGGAATTAGatagaatttttaaagaagaggGTGTATTGGGCGAGGATTCACTATCAGAAGATGAAAATCATATAGAGGTTGAGCCTAATACTCAAAGCAATGAAGAAGTAATAGGTCATCTACAAAGTAAAGAAGGAGAAGATTTGGGAGAACTAGTTATTGTGaataaaaacaccaataaaattagaaTTCAAAATAAGGATGagcCAGGAATAACGAAAAGGAAAAAGTATACATGTGAAATATGTAGACGAGAGTTTTTGCATAATGGTCGTTATGAAGCACATAAGtcttttcataaaaatatgaaatataagtGTAGTAACAGTGAATGTACTTTTGAAGATGTTGCCGAAAGTGTTATTGAAGAACATCAGAAAGAAAGCGGACACAGCGGcattcttttttatgaatgcaTTAATGATTATGGTTCGAAAGTTCAACTACATTTACCTAAAATAGAGGAATATGAACTTTGCAAAGAAGAAcatgaagaaatagaaaaggatATAAAAGTACCCATAGAGATTGAAAATAAGTTTACATGCAACATCTGCAATAAGAATTTTTCTTGCAAACAAAACTTTGAAATTCATCAGAAAGCTGTACACGAAAATCAAAGACCTTATCAATGTGATAAATGTGAAAAAACATTTCCATATATAAATAGTCTAAAATGCCACATGTTACAACATAGTGAGAAAAATGAGAAGCTGTACATATGCGAAGTatgtaaaaaagtatttaatcaTCCCAGTAGTTTAGTATATCATCGTGAAGCAGAGCACAATAATGGAAGAAAGTGTGTGTGTAATATATGTAACAAAAGCTTTAAACATAAACAATTACTACAACGACATCAATTGGTGCATTCTAATGAAAGGCCTCATACTTGCAAGACTTGTGATGCAAGTTTTAAAACGAGAGCTAATCTCTTAAATCACATGCCTATTCATACTGGTGAGAAAAAACACAATTGCACTCAATGCTCGCAGACGTTTGCTCACAAAACATCGCTCACTCTACATATGCGGTGGCATAGTGGTCAGAAACCATATGAATGTGACGTCTGCATGAAAACATTCTCTCAAAAAGGCAATTTAGCAGAGCACAAacgaattcatacagGAGAAAAGCCGTATTGCTGTGATCACTGTGGTCGTAAATTTACAACATCGTCACAATTTAAATTGCACATTAAAAGACATACTGGGGAAAGGCCATGGAGATGTGAATACTGTTCCAAaacatttttgcataaaaacacATGGATGTGTCACACACGACGGCACAGGAATGAAAGGCCTTATCAATGCAAACAGtgttTACGAGGATTTACTGAACAATGGGCTTTGAAGAAACACGAACGTCTTCATACAGGTGAAAAACCATATGTATGCGATATTTGTCAGAGAAGTTTTGCAGAttgttcaaatttaacaaagcaTAAAAAAGTGCATGGAAATCCTAAAGTTGACAGGActgcaaaacctaaaaatttaaaagtgattaCTTCAGATGGCGAAGAAACTCTTGTGCATATAGTGGATCCCTTGGAATCCACACAAAGTGAAGAAACAGATGATGTACAAGAAAATTCCTACCTTTCCCCAATGCTACAAGACTCATTTCaggAACTCATGGATGAAGATGGTAGCTTAATAAATTTAACTACAGCTGATGGGCAACCAGTAAGGGTTTTAGTTACTATGGAGGATGGACAGCAAAGTTTACAAGGTATTACATCAAATGGTACACTAATGCCTATTACGTTAACACTTCACAATGGAAAACCTGTAGTGACATTTACTCCCATAGAAGATGATATAAAAAGTATCATTCCAGAACAAGAACTAACTGAAAATCAAAACAGCCCAGCAACAAATACCAATACTGAATTATTAGATGACAATATACAATTTCTAAACGACGAAGCACAAACTAAGTTGGACAACagtatacaatttttaacaGAAGATGGACAAAACATTTGCTTTGTAACAACTTATATAGATGAAAGTATAAACCCACATTACTTAGCTATTGCCTAA
- Protein Sequence
- MEVAKLLCDSYFCRLCAQENRNSTNLFVHGENEQDLSELVNKYLPLKVERDGKFPILICPGCNIQLEATKQFLDLIIEGQNKLRDLFRIQQDTLRRQEKQKLQLESALKNVNSSSTVETYTIEADESGEKFVIQIFSEGPLFPPEHEMSLKAEGLERPKRKRGRPPKLPASADNIVEIKETLNPVTEQEEEDIDDIENRRKRKIKVPSRFQEAVQGKELDRIFKEEGVLGEDSLSEDENHIEVEPNTQSNEEVIGHLQSKEGEDLGELVIVNKNTNKIRIQNKDEPGITKRKKYTCEICRREFLHNGRYEAHKSFHKNMKYKCSNSECTFEDVAESVIEEHQKESGHSGILFYECINDYGSKVQLHLPKIEEYELCKEEHEEIEKDIKVPIEIENKFTCNICNKNFSCKQNFEIHQKAVHENQRPYQCDKCEKTFPYINSLKCHMLQHSEKNEKLYICEVCKKVFNHPSSLVYHREAEHNNGRKCVCNICNKSFKHKQLLQRHQLVHSNERPHTCKTCDASFKTRANLLNHMPIHTGEKKHNCTQCSQTFAHKTSLTLHMRWHSGQKPYECDVCMKTFSQKGNLAEHKRIHTGEKPYCCDHCGRKFTTSSQFKLHIKRHTGERPWRCEYCSKTFLHKNTWMCHTRRHRNERPYQCKQCLRGFTEQWALKKHERLHTGEKPYVCDICQRSFADCSNLTKHKKVHGNPKVDRTAKPKNLKVITSDGEETLVHIVDPLESTQSEETDDVQENSYLSPMLQDSFQELMDEDGSLINLTTADGQPVRVLVTMEDGQQSLQGITSNGTLMPITLTLHNGKPVVTFTPIEDDIKSIIPEQELTENQNSPATNTNTELLDDNIQFLNDEAQTKLDNSIQFLTEDGQNICFVTTYIDESINPHYLAIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -