Lyun011457.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010001931.1:2059653-2061039[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00068 0.0096 16.4 1.4 1 23 79 101 79 101 0.99 2 13 0.0019 0.027 15.0 0.6 1 23 106 128 106 128 0.98 3 13 0.43 6.1 7.6 3.9 1 23 133 155 133 155 0.97 4 13 0.0057 0.081 13.5 0.8 1 23 160 182 160 182 0.98 5 13 0.00025 0.0035 17.8 1.6 1 23 187 209 187 209 0.98 6 13 0.0092 0.13 12.9 1.5 1 23 214 236 214 236 0.99 7 13 0.0048 0.068 13.8 0.5 1 23 242 264 242 264 0.98 8 13 1.7e-05 0.00024 21.5 1.1 1 23 269 291 269 291 0.99 9 13 0.12 1.7 9.4 0.8 1 23 296 318 296 318 0.98 10 13 0.0013 0.018 15.6 1.1 1 23 323 345 323 345 0.99 11 13 0.14 1.9 9.2 2.9 1 23 350 372 350 372 0.97 12 13 0.026 0.36 11.5 3.1 1 23 376 398 376 398 0.99 13 13 0.0022 0.031 14.8 1.4 1 23 403 425 403 425 0.99
Sequence Information
- Coding Sequence
- atgGATGTGGATCCTATTGAAAGTAAtgcaataaaatctgaagtgattaTAGCAGAAGCGTTTTCATTTTGTGGACAATACACAGGTTATGgggataaagaactaaaaacagacccagtagattacgaagaatcttttaaatgtaaggaGGAAGATATTTCTGTAGAACAGATAGACATGCATGCTGCTCCGATGCATCTACGAAAACATGTTGAAATTCATAAAGGggttgaatataagtgtaaagaatgtgattataaaacagtgtggcaaaataatctaaagaaacatatcaaaattcatacaagagataaatataagtgcaaggaatgtgattataaatcagcatggcaaagtaatctaaaagaacatgtcaaaattcatactggtgttgaatataagtgtaaagaatgtgattataaaacactgtggcaaaataatctaaagcaacatatcaaaatgCATACAggagatgaatataagtgtaaggaatgtgattttaaatcaGTAtggcaaagtaatctaaaggaTCATGTCAAAATCCACagaggtgacaaatataagtgtaaagaatgtgactataaaacagtaagaaAAGGTAGTCTAAATGAACacttcaaaattcatacaggtaatgaatataagtgtaaagaatgcgattttAAAACGGTTTGGCAAAATAGTTtaaagcaacatatcaaaatgCATAATTCAagagatgaatataagtgtaacgaatgtgattttaaatcaGCATggcaaagtaatttaaaggaacatgtaaaaattcatagaggtaacaaatataagtgtaaagaatgtgactataaaacagtacgaaaaggtagtctaaaggaacacatcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattttaaaacagcatggctaaatagtctaaaggaacatgtcaaaatgcatattggtgatgaatataagtgcaaggaatgtgattataaaacagtgtggcaaaataatctaaagcaacatatcaaaattcatacaggagatgaatataagtgtaaggaatgtgattataaaacactgtggcAAAGTTCTCTAATGagacatattaaaattcatacagctaaatataagtgtaaagagtgtgattataaaacaacatggcaatgtagtctaaaggaacatgtcagaattcatactggtggtgaatataagtgtaaagaatgtgattataaaacaaaatggcaaagcagtctaaaggaacatgtcaaaatccattgcggtgatgaatataagtgtaaagaatttgactataaaacagtgcaaaatattgtctaa
- Protein Sequence
- MDVDPIESNAIKSEVIIAEAFSFCGQYTGYGDKELKTDPVDYEESFKCKEEDISVEQIDMHAAPMHLRKHVEIHKGVEYKCKECDYKTVWQNNLKKHIKIHTRDKYKCKECDYKSAWQSNLKEHVKIHTGVEYKCKECDYKTLWQNNLKQHIKMHTGDEYKCKECDFKSVWQSNLKDHVKIHRGDKYKCKECDYKTVRKGSLNEHFKIHTGNEYKCKECDFKTVWQNSLKQHIKMHNSRDEYKCNECDFKSAWQSNLKEHVKIHRGNKYKCKECDYKTVRKGSLKEHIKIHTGDEYKCKECDFKTAWLNSLKEHVKMHIGDEYKCKECDYKTVWQNNLKQHIKIHTGDEYKCKECDYKTLWQSSLMRHIKIHTAKYKCKECDYKTTWQCSLKEHVRIHTGGEYKCKECDYKTKWQSSLKEHVKIHCGDEYKCKEFDYKTVQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -