Lyun001858.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000247.1:2990963-2996219[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.4 5.6 7.7 0.0 1 21 288 308 288 309 0.95
2 20 0.032 0.45 11.2 3.0 1 23 372 394 372 394 0.98
3 20 0.0062 0.088 13.4 4.4 1 23 399 421 399 421 0.98
4 20 0.0029 0.042 14.4 1.2 1 23 426 448 426 448 0.99
5 20 0.052 0.74 10.5 3.6 1 23 453 475 453 475 0.98
6 20 0.00086 0.012 16.1 0.5 1 23 480 502 480 502 0.99
7 20 0.049 0.7 10.6 2.6 1 23 507 529 507 529 0.98
8 20 0.17 2.4 8.9 1.6 1 23 534 556 534 556 0.97
9 20 0.017 0.23 12.1 0.7 1 23 561 583 561 583 0.98
10 20 0.00064 0.009 16.5 4.0 1 23 588 610 588 610 0.98
11 20 0.17 2.4 8.9 2.6 1 23 615 637 615 637 0.98
12 20 0.023 0.32 11.7 2.5 1 23 642 664 642 664 0.98
13 20 0.055 0.77 10.4 1.3 1 23 669 691 669 691 0.98
14 20 0.071 1 10.1 0.8 1 23 696 718 696 718 0.98
15 20 0.058 0.82 10.4 2.7 1 23 723 745 723 745 0.99
16 20 0.023 0.32 11.7 0.8 1 23 750 772 750 772 0.98
17 20 0.15 2.2 9.0 1.3 1 23 777 799 777 799 0.97
18 20 0.081 1.1 9.9 2.1 1 23 804 826 804 826 0.97
19 20 0.11 1.6 9.5 0.7 1 23 831 853 831 853 0.97
20 20 0.0061 0.086 13.4 1.8 1 23 858 880 858 880 0.98

Sequence Information

Coding Sequence
atgaagTACCTCGTGCCTAGAGCTTTAAATCAAGATAGTGCAGAAAATTTCTTTGGTTGCATCAGATCACATGGGGTAAGAAACATATCTCCTGATGTTAATCATTTCATCATCTCATTTAAAAGCctgttattaaacaattttatgtccAGCCACTCACCAGGTTCCAACTGTGAAGATGATTTCAGTGTAGGGACTTTAGATAATTTAAGATGTTTTTTAACAGGTGAATGTATTTCTGGAATTCGCCCATTAGATTGGGAAAATGCTGAAAGAACTGTTCctacaattgttttaaatgtgaaGGAAACGCGAATTGCAAAATCGATGATAGCGTACATAGCTGATTTTGTGGCccgaaaagttttaaaagtaacaAGTCAGTGTGAAGTttgtaaaaaagtattattacattCAGATGGCGATGTTGATGTAGGAGTTATTCAGGCTAGACAATATAATACACAATGCAATTTAATAACTCCTGGCAGctctttatattttgttacaaatcAATCATTAtcaaaactgttttattttattcccaCAAATTGTCATAAAGAcaatttgtttagtttgttCTGTGATATAATTTCCAAAGACATAAACTTTAATGTACTCAACTGTACAAAACACACATTTATAAAATTAAGTGACGCAATGGATGttgattctattgaaaattGTGCGTTAAAGTCTGAAGTGACTTTAAcacaaacattttcattttgtggaaaatatgaagATTGTACAAGTACAGAATTAAAAACAGAGTCAGTAGATTGTGAAGAATCATTTATATGTAAGGAAGGAGCTGATCATGTAGAGCACGTAGATACACGTGCTGTTCCAAAGCGACAATATtcttgtaatgaatgtaattttactgcaacagaagaagattctcttgtagaacatttgaaaattattaaaaatgttcaatatttttgtaaagaatgtaactttAGAACACAGTTAGAATGTTCCATAAAAGACCATTTCAGAATGCACAAAGGAGTAGCTCTCAGATatatttttgaagaatgtaGTGTTAAGACACCATGGATTTTCTTTATCGCACCACAGctaaaaacttcaaaaagtgatgtcaaatatatttgtaatgaatgtaattttactacATCAATCAAAAATTGTCTTCGGagacatgtgaaaattcatgaAGGTATCAAATATGCATGcaagaaatgtgattataaaacagcacaCAAACATGGTTTACAGCAACATGTCAATACACATACGGGTGacgagtataagtgtaaagattgtgattataaaacagtttggaaacgaaatttaaaggaacatatcaaaatacatacaggtaatgagtataagtgtaaagattgtgatcataaaacagtttggaaacaaaatctaaagaaacatgtcaaattacatacaggcgatgaatataagtgtaacgaatgcaACTATAAAACGGTAGCGAAAGGTAATCTAAAggtacatgtcaaaattcatacaagtgacaagtataagtgtaaagaatgtgattacaaaacagtttgGGAACACcaactaaagaaacatgtcaaaatacatacaggtgacgagtataagtgtaaggattgtgattataaaacagtttggacacaaaattttaaggaaCATATCAAATTACATACAGGTGAAGAGTAtcagtgcaaagaatgtgattataaaacagtttgggaATACGATCTAAAGAAGCAtgtcaaaatacatacaggtgacgaatataagtgtaaagattgtgattataaaacagttcgGGAACATcaactaaagaaacatgtcaaattacatacaggtgatgagtataagtgtaaggattgtgattataaaacagtttggaaacaaaattttaaggaaCATACCAAATTACATACAGGTGaggagtataagtgtaaagaatgtgattataaaacagtgtgggaaCACAATCTAAAGAAGCAtgtcaaaatacatacaggtgacgagtataagtgtaaagattgtgattataaaacagtttgggaACAAcaactaaagaaacatgtcaaattacatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtttgggaAAACCAACTCAAGACACATGtaaaaatacatacaggtgacaagtataagtgtaaagaatgtgattataaaacaatttgggaacattatctaaagaaacatgtcagaATACATACAGGTGAgaagtataagtgtaaagaatgtgattataacaCAGTTTGGGAATACAGTCTAAAGAGGCAtgtcaaaatacatacaggtgacgagtataagtgtaaagattgtaattataaaacagtttgggaACAACAATTAAAGAATCATGTCAAATtgcatacaggtgataaatataagtgtaaagaatgtgattataaaacattttggGAATACcaactaaagaaacatgtcaaaatacatacaggtgatgagtataagtgtaaagattgtgattataaaacagtttgggatcgaaatctaaaggaacatgtcaaaatacatacaggtgacaagtataagtgtaaagattgtgattataaaacagtttggcgACGAAATCTAAAGAAACACGTCAAAATACATACAGTGTAA
Protein Sequence
MKYLVPRALNQDSAENFFGCIRSHGVRNISPDVNHFIISFKSLLLNNFMSSHSPGSNCEDDFSVGTLDNLRCFLTGECISGIRPLDWENAERTVPTIVLNVKETRIAKSMIAYIADFVARKVLKVTSQCEVCKKVLLHSDGDVDVGVIQARQYNTQCNLITPGSSLYFVTNQSLSKLFYFIPTNCHKDNLFSLFCDIISKDINFNVLNCTKHTFIKLSDAMDVDSIENCALKSEVTLTQTFSFCGKYEDCTSTELKTESVDCEESFICKEGADHVEHVDTRAVPKRQYSCNECNFTATEEDSLVEHLKIIKNVQYFCKECNFRTQLECSIKDHFRMHKGVALRYIFEECSVKTPWIFFIAPQLKTSKSDVKYICNECNFTTSIKNCLRRHVKIHEGIKYACKKCDYKTAHKHGLQQHVNTHTGDEYKCKDCDYKTVWKRNLKEHIKIHTGNEYKCKDCDHKTVWKQNLKKHVKLHTGDEYKCNECNYKTVAKGNLKVHVKIHTSDKYKCKECDYKTVWEHQLKKHVKIHTGDEYKCKDCDYKTVWTQNFKEHIKLHTGEEYQCKECDYKTVWEYDLKKHVKIHTGDEYKCKDCDYKTVREHQLKKHVKLHTGDEYKCKDCDYKTVWKQNFKEHTKLHTGEEYKCKECDYKTVWEHNLKKHVKIHTGDEYKCKDCDYKTVWEQQLKKHVKLHTGDEYKCKECDYKTVWENQLKTHVKIHTGDKYKCKECDYKTIWEHYLKKHVRIHTGEKYKCKECDYNTVWEYSLKRHVKIHTGDEYKCKDCNYKTVWEQQLKNHVKLHTGDKYKCKECDYKTFWEYQLKKHVKIHTGDEYKCKDCDYKTVWDRNLKEHVKIHTGDKYKCKDCDYKTVWRRNLKKHVKIHTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-