Lyun015557.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002166.1:116117-117655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.011 0.15 12.7 0.2 1 21 63 83 63 84 0.95 2 14 8 1.1e+02 3.6 0.2 8 23 118 133 111 133 0.84 3 14 0.022 0.31 11.7 1.4 1 23 138 160 138 160 0.98 4 14 0.021 0.29 11.8 3.6 1 23 165 187 165 187 0.98 5 14 0.02 0.29 11.8 2.9 1 23 192 214 192 214 0.99 6 14 0.011 0.15 12.7 2.4 1 23 219 241 219 241 0.97 7 14 0.00097 0.014 16.0 1.1 1 23 246 268 246 268 0.98 8 14 5.6 79 4.1 1.1 1 23 273 295 273 295 0.93 9 14 0.03 0.42 11.3 0.8 1 23 301 323 301 323 0.96 10 14 2.5e-05 0.00036 20.9 1.6 1 23 328 350 328 350 0.99 11 14 0.0021 0.03 14.9 3.5 1 23 355 377 355 377 0.99 12 14 0.00098 0.014 15.9 0.8 1 23 382 404 382 404 0.98 13 14 0.00018 0.0025 18.3 0.7 1 21 409 429 409 430 0.95 14 14 0.0011 0.016 15.8 4.6 1 23 436 458 436 458 0.99
Sequence Information
- Coding Sequence
- ATGGACGAAAGTTATCCAATAAAATCGGAGGTGgttgtaaatgaaacatttgCCTATTatggaaaatatgaagattgtggGAATGAAGAATTGAAAACGGAGCCAATAGATTTTGAAGAACCTTTTAAATGTGAGGTAGAGGATAATCTTGCAGAGCACATTGACACAAGTGTACCCACGTATCAATATatttgtaaggaatgtaattttattacaacaaagaaagattctctaatagaacatttgaaaatcaCTGAAAgcgttcaatatttttgtaaaAAATCTTTCTCTTTAGCAACGCAGTTGAAAACTCCAAAAAGTCCCGATGAATATAGTTGTAaggaatataattataaaacaccgaGGAAAGAGAcgttaaaggaacatgtaaaaattcatactgatgatcAATAtatgtgtaaggaatgtgattttaaaacagtatggaaacggaatttaaaggaacatgtaagacgacatactggtgatgaatttaAATGCATGGAATGTGAATTTAAAACAGTGAGAAAACACAGGCTAAatgaacatatgaaaattcataccggtggtgaatataagtgtaagaaatgtgattttaaaacagtatggaaacggAATTTAAAAGAACATGTAAGACGGCATACTGGTGATGTATTTATATGCatggaatgtgattttaaaacagtgaggaaacaCAGGCTAAatgaacatatgaaaattcatattggtGGTGAATAtgagtgtaaggaatgtaactataaaacagtgaagaAATATGGACTAAAGGAACAcgtgaaaattcataccggtgatgaatataagtgtaatgaatgtatttataaaacaccatggaaacaaaaactaaaacaacatgtgaaaattcatactactGATCCTGAATATAATTGTaaggagtgtgattataaaacattttggaGTCAGAATCTAAAGGTTCATATggaaattcatagtggtgaagaatataagtgtaaggaatgtgattataaaacggcgAGGAAATGGAGTCTGAAGcgacatgtgaaaattcataccggtgctgaatataagtgtaacgaatgtgactttaaaacagtgAGAAAATGTACTCTAAAGGTACAcgtgaaaattcatagtgacaataaatataagtgtaaggaatgtgattataaaacaagttGGAGTCAGAATCTAAAGGTTCATATGGAAATTCAtattggtgatgaatataagtgtgaagaatgtgactataaaacagcgAGAAAACGGAGTCTGAAGcgacatgtaaaaattcaaaccggtgctgaatataagtgtaacgaatgtgactttaaaacagtgaggaaatgtagtctaaagaaacatgttaaaattcatactgatgatgaatataagtatAAGAAAAGTGATTAG
- Protein Sequence
- MDESYPIKSEVVVNETFAYYGKYEDCGNEELKTEPIDFEEPFKCEVEDNLAEHIDTSVPTYQYICKECNFITTKKDSLIEHLKITESVQYFCKKSFSLATQLKTPKSPDEYSCKEYNYKTPRKETLKEHVKIHTDDQYMCKECDFKTVWKRNLKEHVRRHTGDEFKCMECEFKTVRKHRLNEHMKIHTGGEYKCKKCDFKTVWKRNLKEHVRRHTGDVFICMECDFKTVRKHRLNEHMKIHIGGEYECKECNYKTVKKYGLKEHVKIHTGDEYKCNECIYKTPWKQKLKQHVKIHTTDPEYNCKECDYKTFWSQNLKVHMEIHSGEEYKCKECDYKTARKWSLKRHVKIHTGAEYKCNECDFKTVRKCTLKVHVKIHSDNKYKCKECDYKTSWSQNLKVHMEIHIGDEYKCEECDYKTARKRSLKRHVKIQTGAEYKCNECDFKTVRKCSLKKHVKIHTDDEYKYKKSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -