Lyun014712.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002108.1:5395850-5397825[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.36 5.1 7.9 4.3 1 23 50 72 50 72 0.97
2 17 0.18 2.6 8.8 3.7 1 23 77 99 77 99 0.97
3 17 0.019 0.27 11.9 1.2 1 23 104 126 104 126 0.98
4 17 0.05 0.71 10.6 1.3 1 23 131 153 131 153 0.98
5 17 0.11 1.6 9.4 1.5 1 23 158 180 158 180 0.98
6 17 0.0014 0.019 15.5 0.8 1 23 306 328 306 328 0.97
7 17 0.00036 0.0051 17.3 1.8 1 23 333 355 333 355 0.99
8 17 0.027 0.38 11.4 1.1 1 23 360 382 360 382 0.98
9 17 0.027 0.38 11.4 1.1 1 23 387 409 387 409 0.98
10 17 0.00076 0.011 16.3 1.2 1 23 414 436 414 436 0.99
11 17 0.00076 0.011 16.3 1.2 1 23 441 463 441 463 0.99
12 17 0.24 3.5 8.4 4.2 1 23 468 490 468 490 0.97
13 17 0.042 0.59 10.8 1.7 1 23 495 517 495 517 0.98
14 17 0.45 6.4 7.6 2.1 1 23 522 544 522 544 0.97
15 17 0.007 0.099 13.3 2.0 1 23 549 571 549 571 0.99
16 17 0.0013 0.019 15.5 1.6 1 23 576 598 576 598 0.99
17 17 0.0002 0.0029 18.1 1.8 1 23 603 625 603 625 0.99

Sequence Information

Coding Sequence
ATGGATATTAATTCTACTGAAAGTTGTACGCCTAGTACGTTAAAATCGGAAATTATTTTAACGGAAACATTTTGTAGCAACCGTGAAGGTGAAAAAGattgtggTAATGAAGAACTGAAAACGGAGCCAGTTGATTACAAAGAATtgtttaagtgtaaagaatgtgattataaaacattgcagAAACATAGTCTAAtggaacatttcaaaattcatacaggtgtggaatataagtgtaacgaatgtgattataaaacattgcagAAACATAGTCTAAtggaacatttcaaaattcatacaggtgaggaatataagtgtaaagactgtgattataaaacagtttggaagcgcagtctaaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaacgaatgtgattataaaacagtttggaaacgtagtctaaaggaacatgtgaaaaatcatacaggtgaggaatataagtgtaaagaatgtgattataaaacaatgtggaaacgtagtctaaaggaacatgtcaaaattcatacaggtgaaaaaGattgtggTAATGAAGAACTGAAAACGGAGCCAGTTGATTACAAAGAATTGTTTAAGTGTAAAGAAGATGACCCAGCAGAGCACATGGACACATCTGCCCCAATACAACAATGTTCTTGTAATGAGCATAACTTTACAACAATGGAAAAAGATTCCGTACAAGGACATTTAAAAACTACCAAAAGTATTCAATATTTCTGTAAGTACTGTAACTTTAGAACCCATTTGGAaggtttcataaaaaaacatttgaaaattcacaaGGGAGTAGTTGATACATATATTACTAAGGAATGTAGTTTGAAGACGTCACAGAGTTTGTCTATCGCACCACATGTAAAAACGTCAAGAAGTGATGATcaatacatttgtaatgaatgtaattttacgacgTTAAACAAATCTTCTCTAAGGAGACATATGGCAATTCATATAGGTGACaattataagtgtaaagaatgtgattataaaacaatgcaGAAACGTAATCTAAatgaacatgttaaaattcatacaggtaaagactataagtgtaaagaatgtgattataaaacagtttggaagcgcagtctaaaggaacatgttaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtttggaaacgtagtctaaaagaacatgttaaaattcatacaggtgtggaatataagtgtaaagagtgtgactacaaaacagtgCGGGAAAGTaggctaaaggaacatgtcaaaattcatagaggtgatgaatataagtgtaaagagtgtgattacaaaacagtgcggGAAAGTaggctaaaggaacatgtcaaaattcatacaggtgagaaatataaatgtaaagaatgtgattataaaacattgcagAAACATAGTCTAAtggaacatttcaaaattcatacaggtgaggaatataagtgtaaagactgtgattataaaacagtgtggaaacgtagtctaaaggaacatgtgaaaaatcatacaggtgaggaatataagtgtaaagaatgtgattataaaacaatgtggAAACGTAGTCTACaggaacatttcaaaattcatacaggtgaaaaatataagtgtaacgaatgtgattataaaacaatgaagAAACGTAGACTAAATGaacacattaaaattcatacaggcgaggaatataagtgtaaagaatgtgattataaaacaattcagAAATATAGACTAAacgaacatgtcaaaattcatacaggcgaagaatataagtgtgaagagtgtgattacaaaacagtgcggaaatataggctaaaggaacacatcaaaatgcATACAGGTTAG
Protein Sequence
MDINSTESCTPSTLKSEIILTETFCSNREGEKDCGNEELKTEPVDYKELFKCKECDYKTLQKHSLMEHFKIHTGVEYKCNECDYKTLQKHSLMEHFKIHTGEEYKCKDCDYKTVWKRSLKEHVKIHTGEEYKCNECDYKTVWKRSLKEHVKNHTGEEYKCKECDYKTMWKRSLKEHVKIHTGEKDCGNEELKTEPVDYKELFKCKEDDPAEHMDTSAPIQQCSCNEHNFTTMEKDSVQGHLKTTKSIQYFCKYCNFRTHLEGFIKKHLKIHKGVVDTYITKECSLKTSQSLSIAPHVKTSRSDDQYICNECNFTTLNKSSLRRHMAIHIGDNYKCKECDYKTMQKRNLNEHVKIHTGKDYKCKECDYKTVWKRSLKEHVKIHTGEEYKCKECDYKTVWKRSLKEHVKIHTGVEYKCKECDYKTVRESRLKEHVKIHRGDEYKCKECDYKTVRESRLKEHVKIHTGEKYKCKECDYKTLQKHSLMEHFKIHTGEEYKCKDCDYKTVWKRSLKEHVKNHTGEEYKCKECDYKTMWKRSLQEHFKIHTGEKYKCNECDYKTMKKRRLNEHIKIHTGEEYKCKECDYKTIQKYRLNEHVKIHTGEEYKCEECDYKTVRKYRLKEHIKMHTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-