Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010000779.1:5898764-5901001[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.048 0.69 10.6 0.1 1 21 60 80 60 81 0.95

2 21 1.2 16 6.3 1.6 1 23 144 166 144 166 0.96

3 21 0.0049 0.069 13.7 1.2 1 23 192 214 192 214 0.98

4 21 0.00054 0.0076 16.8 1.0 1 23 219 241 219 241 0.99

5 21 0.0034 0.048 14.3 1.4 1 23 246 268 246 268 0.98

6 21 0.071 1 10.1 1.1 1 23 273 295 273 295 0.98

7 21 0.0011 0.015 15.8 1.5 1 23 300 322 300 322 0.99

8 21 0.0023 0.033 14.8 1.4 1 23 327 349 327 349 0.98

9 21 0.007 0.099 13.3 2.4 1 23 354 376 354 376 0.98

10 21 0.91 13 6.6 1.5 1 23 381 403 381 403 0.91

11 21 0.5 7.1 7.4 1.0 1 23 408 430 408 430 0.96

12 21 0.15 2.2 9.0 1.8 1 23 435 457 435 457 0.98

13 21 0.0029 0.041 14.5 1.8 1 23 462 484 462 484 0.98

14 21 0.091 1.3 9.8 0.9 1 23 489 511 489 511 0.98

15 21 0.007 0.099 13.3 2.4 1 23 516 538 516 538 0.98

16 21 0.0034 0.048 14.3 1.4 1 23 543 565 543 565 0.98

17 21 0.54 7.7 7.3 2.2 1 23 570 592 570 592 0.98

18 21 0.00087 0.012 16.1 0.9 1 23 602 624 602 624 0.99

19 21 8.6 1.2e+02 3.5 0.6 1 9 629 637 629 642 0.89

20 21 0.51 7.2 7.4 1.2 2 23 656 677 655 677 0.96

21 21 0.5 7.1 7.4 4.1 1 23 682 704 682 704 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.048	0.69	10.6	0.1	1	21	60	80	60	81	0.95
2	21	1.2	16	6.3	1.6	1	23	144	166	144	166	0.96
3	21	0.0049	0.069	13.7	1.2	1	23	192	214	192	214	0.98
4	21	0.00054	0.0076	16.8	1.0	1	23	219	241	219	241	0.99
5	21	0.0034	0.048	14.3	1.4	1	23	246	268	246	268	0.98
6	21	0.071	1	10.1	1.1	1	23	273	295	273	295	0.98
7	21	0.0011	0.015	15.8	1.5	1	23	300	322	300	322	0.99
8	21	0.0023	0.033	14.8	1.4	1	23	327	349	327	349	0.98
9	21	0.007	0.099	13.3	2.4	1	23	354	376	354	376	0.98
10	21	0.91	13	6.6	1.5	1	23	381	403	381	403	0.91
11	21	0.5	7.1	7.4	1.0	1	23	408	430	408	430	0.96
12	21	0.15	2.2	9.0	1.8	1	23	435	457	435	457	0.98
13	21	0.0029	0.041	14.5	1.8	1	23	462	484	462	484	0.98
14	21	0.091	1.3	9.8	0.9	1	23	489	511	489	511	0.98
15	21	0.007	0.099	13.3	2.4	1	23	516	538	516	538	0.98
16	21	0.0034	0.048	14.3	1.4	1	23	543	565	543	565	0.98
17	21	0.54	7.7	7.3	2.2	1	23	570	592	570	592	0.98
18	21	0.00087	0.012	16.1	0.9	1	23	602	624	602	624	0.99
19	21	8.6	1.2e+02	3.5	0.6	1	9	629	637	629	642	0.89
20	21	0.51	7.2	7.4	1.2	2	23	656	677	655	677	0.96
21	21	0.5	7.1	7.4	4.1	1	23	682	704	682	704	0.98

Sequence Information

Coding Sequence: atggaCGTTGATTCCACTGaaagttttgaaattaattctGAAGTGAGTTTAATAGAAACTTCCACGTCTTGTGGAGAATACAGAGATTGTGAGAATGCAGAATTGAAAACTGAACCAGTAAATTATGAAGAATCGTTTAAACGTAATGAAAAAGATGATCCTATTCTGTTGCAACAATATTCTTGCAATGAGTGTAATTTTATCACAACAGAAAATgattctctaatagaacatttgaaaattactaaaaatgttgaatttttttgtaagaaatgtaactttaaaacctGGATGGAATGTTCTACAAAAGACCATCTGAGGATTCACAAAGAAGtatatattagatatattgctgaagaatgtaattttaatacgcCATGTATTTTTTCGTTAATGCCACAAATAAAGACTCCAATAAGTGGTGACCAATATGTTtgcaataaatgtaattataccgCATTACTAACAAATGATCTAAAAAgccatatgaaaattcacacacaTGAAGAGTATGGTCATAAAACAGTAGGAAAGGAGttagaaaaacatttcaaaattcacacaggtaataaatataaatgtaaagaatgtggttataaaacagtacgaaaagATCGTATGAAGggtcatgtcaaaattcatataggcgaggaatataaatgtaaagaatgtgattataaaacagcgcgGAATGATAGTATGaaggatcatgtcaaaattcatacaggtgaggaatataagtgtaatgaatgtgattataaaacagtgcggaaagatCGTATGAAGGatcatgtgaaaattcatacaggtgatgaatataggtgtgaagaatgcgattataaaacagtgtggaaaaagaATATGAAGActcatgttaaaattcattcaggtaatgaatataaatgtaaagaatgtaactataaaacagtgcggaatgATAGTATGaaggatcatgtcaaaattcatacaggtgaggaatataagtgtaatgactgtgattataaaacagtgcggaaagatCGTATGaaggatcatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgcggaaatatCGTATGaaggatcatgtcaaaattcatacagatgatgaatataaatgtaaagaatgtgattataaaacagtgtggaaatatCGTATGaaggatcatgtcaaaattcatacaggtgaggaatataagtgtaatgaatgtgattataaaacagtgtggaaagatCGTATGAAGGATCATGTGAAAATGCATACAGGTGTTGAATATAGGTGTGAacaatgcgattataaaacagtgtggaaaaagaATATGAAGACTCATGTTAAAATGCATACAGGTaatcaatataaatgtaaagagtgtaattataaaacagtacgaaaagATCGTATGAAGgctcatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgtggaaggATCGTctgaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgcggaaatatCGTATGaaggatcatgtcaaaattcatacaggtgaagaatataagtgtaatgaatgtgattataaaacagtgcggaaagatCGTATGAAGGatcatgtgaaaattcatacaagtgatgAATATAGGTGTGaagaatgcaattataaaacaatgtggAAAAAGAATATGAAGACTCATGTTAAAATGCATACAggaaatgaatataaatgtgataagtataaatgtaaagaatgtgattataaaacaccgcGGAAACTAAGTCTAAatgaacatgtgaaaattcatacaggtgaggaatataagtgtaatgaatgtgattataaaacagtgtggaaagatAGTATGAAGGAttatgtcaaaattcatacaggtgataataaatgtaaagaatgtgattataaaacattgcggAAACTTAGTCTAAatgaacatgtgaaaattcatacaggtgaggaatataagtgtaatgaatgtgattgtaaaacagtgtggaaaagtaatATGAAGACTCATTTTAAAATTCACATGTAA
Protein Sequence: MDVDSTESFEINSEVSLIETSTSCGEYRDCENAELKTEPVNYEESFKRNEKDDPILLQQYSCNECNFITTENDSLIEHLKITKNVEFFCKKCNFKTWMECSTKDHLRIHKEVYIRYIAEECNFNTPCIFSLMPQIKTPISGDQYVCNKCNYTALLTNDLKSHMKIHTHEEYGHKTVGKELEKHFKIHTGNKYKCKECGYKTVRKDRMKGHVKIHIGEEYKCKECDYKTARNDSMKDHVKIHTGEEYKCNECDYKTVRKDRMKDHVKIHTGDEYRCEECDYKTVWKKNMKTHVKIHSGNEYKCKECNYKTVRNDSMKDHVKIHTGEEYKCNDCDYKTVRKDRMKDHVKIHTGDEYKCKECDYKTVRKYRMKDHVKIHTDDEYKCKECDYKTVWKYRMKDHVKIHTGEEYKCNECDYKTVWKDRMKDHVKMHTGVEYRCEQCDYKTVWKKNMKTHVKMHTGNQYKCKECNYKTVRKDRMKAHVKIHTGDEYKCKECDYKTVWKDRLKEHVKIHTGDEYKCKECDYKTVRKYRMKDHVKIHTGEEYKCNECDYKTVRKDRMKDHVKIHTSDEYRCEECNYKTMWKKNMKTHVKMHTGNEYKCDKYKCKECDYKTPRKLSLNEHVKIHTGEEYKCNECDYKTVWKDSMKDYVKIHTGDNKCKECDYKTLRKLSLNEHVKIHTGEEYKCNECDCKTVWKSNMKTHFKIHM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -