Lyun008145.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010001401.1:417430-419137[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0007 0.0099 16.4 0.7 2 23 122 143 121 143 0.95 2 13 1.3 18 6.1 1.4 2 21 197 216 196 217 0.93 3 13 0.013 0.18 12.4 1.9 3 23 229 249 227 249 0.94 4 13 0.00093 0.013 16.0 0.9 1 23 265 288 265 288 0.93 5 13 0.25 3.5 8.4 0.1 2 23 295 317 294 317 0.91 6 13 0.0023 0.033 14.8 0.8 2 23 332 353 331 353 0.96 7 13 0.014 0.2 12.3 4.6 1 23 358 380 358 380 0.97 8 13 0.00035 0.005 17.3 0.5 2 23 386 408 385 408 0.92 9 13 0.0018 0.025 15.1 1.9 1 23 414 436 414 436 0.96 10 13 0.016 0.23 12.1 2.9 1 23 442 464 442 464 0.97 11 13 0.0013 0.019 15.5 10.0 1 23 470 494 470 494 0.99 12 13 0.0014 0.02 15.5 0.6 1 23 500 522 500 522 0.98 13 13 5.6e-05 0.00079 19.9 4.7 1 23 528 550 528 550 0.95
Sequence Information
- Coding Sequence
- ATGGAAATCATTGTGGAACTGCCGAAAGACATTGATAAACTATGCCGCACTTGTATGGGTTTTGCTGACGGCAAAAGTCCGTTGTTTGACTTCATCGCCACCGTGGATGAGAAAACCGAATTATGTAAAATGTTGCTTTCCGTAACTTCTCTTAAGGTGTCAATCGGAGACGGTTTGCCAACACACTTATGTAATTACTGTGTAGAACAATTAAATACTGCATATACATTTATACAGCAGTGTACGGAATCAgactatacgtttaaaaatgTTGTGAATTCTTTCGCAAAAGAAGAACATACGatgaaagaagaagaagcgGAAAACGCAGAAATCTGTTtaggtaaaattaataaagatttaataTGCAAAGTGTGTAACGAAACATttaaatcttattatcaacttAGTATGCACACTGTTACTCATAATGCTTCTGTCAGCTTAACGGAAAGATTTAAAAGTTCCAGTTGTGATGATGATCAGTTTGATTTAAAGGATTTTCGTGACCCAGTAGAAGTCTACTCGTTAATCGAAGAATGCAGACAATCATTGGTTTCTTtgaatgaaaatgtaaataaattaaatcaatgtGGTAAGTGTTGTAGGGAATTCAAATCTGAATTTGCTTTGGCAAAACACATTTCCAAGCAGTCTTGTAGAAATAAGACCGTTCGAACTGCTTGTACTTTCTGTGGTAAACATTTTTCAGACTTGTTAAATTTGTCACTGCATTTTTTAAATCACTCACTTGCATATGAAGTGTTAAATAGTGATATTGTGCCAGAAGTGTTTTTTTGTGAAGTTTGTGGACAGGTATTTGAGGATAATTCATGTTTAGCTGACCATTACAATGATAAACATAACTATGTATCAATGTGGGAATGTACAGATTGCATGGAGGTGTTtgacaaagaaaagaatttgttAAGTCATGTTGCACTTACACATGGATTTGATACCAGTTACACCATTGAAGCAGAGAATAGTGTTCAATGTAATTTATGTCCCGAAGAATTTTCTTCTAAGATTGAATTGCATAAACACTCTCTCAGTCATCTGATGAGAAGGTATACATGTAAAAAGTGTTCTTTGTGCTTTTCCACTCAGTACGCGTACTATGGACATTTAAAGGATCATAATCCTACTCATTGCATTTGTAAAATATGTGGAAAATATTTGAGCACAAACAGTGCTTTAAAATCTCACATAGAAGGTGTTCATTCTGAGACCTTGGAATATTGTTGTGCCATCTGTGGCAAACGTTTTTCAACAGTTCCCAGGTTAAAAACACACTCTAAAATTCATACAACTGAGAAAAAGCACATTTGCAGTTTTTGTGGATATAGTTCTCATAAATCAGGTGATTTAATAATACATACCAGAACGCACACAAGCGAAAGACCTTACAAGTGCACATTCTCAAACTGTACCATGAGTTTTAAAACTTCTAGTCACCTATGTCACCATATTAGAAggcatttgaaaattaaaaaatataaatgcgaCATTTGTTTAGGAAAGTTTTCCACAAACAATGGACTAAAAGTGCACCAAATGCAACATACCGGTGAAAAACCTTATTTGTGCATGGTTTGTAAAAGAACATTTAGGAGAAAGTATCATCTTAAAGTTCATATGAATCAACATACATCATAG
- Protein Sequence
- MEIIVELPKDIDKLCRTCMGFADGKSPLFDFIATVDEKTELCKMLLSVTSLKVSIGDGLPTHLCNYCVEQLNTAYTFIQQCTESDYTFKNVVNSFAKEEHTMKEEEAENAEICLGKINKDLICKVCNETFKSYYQLSMHTVTHNASVSLTERFKSSSCDDDQFDLKDFRDPVEVYSLIEECRQSLVSLNENVNKLNQCGKCCREFKSEFALAKHISKQSCRNKTVRTACTFCGKHFSDLLNLSLHFLNHSLAYEVLNSDIVPEVFFCEVCGQVFEDNSCLADHYNDKHNYVSMWECTDCMEVFDKEKNLLSHVALTHGFDTSYTIEAENSVQCNLCPEEFSSKIELHKHSLSHLMRRYTCKKCSLCFSTQYAYYGHLKDHNPTHCICKICGKYLSTNSALKSHIEGVHSETLEYCCAICGKRFSTVPRLKTHSKIHTTEKKHICSFCGYSSHKSGDLIIHTRTHTSERPYKCTFSNCTMSFKTSSHLCHHIRRHLKIKKYKCDICLGKFSTNNGLKVHQMQHTGEKPYLCMVCKRTFRRKYHLKVHMNQHTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -