Lyun015678.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010002175.1:4684156-4688447[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.28 4 8.2 1.0 1 23 128 150 128 150 0.97
2 19 2 28 5.5 3.9 1 23 155 177 155 177 0.98
3 19 0.00041 0.0059 17.1 2.1 1 23 182 204 182 204 0.99
4 19 0.69 9.8 7.0 0.8 1 23 209 231 209 231 0.95
5 19 9.4e-05 0.0013 19.2 1.5 1 23 236 258 236 258 0.99
6 19 2.1 29 5.5 3.3 1 23 263 285 263 285 0.97
7 19 0.024 0.34 11.6 3.8 1 23 290 312 290 312 0.99
8 19 0.17 2.4 8.9 0.6 1 23 317 339 317 339 0.97
9 19 0.24 3.4 8.4 1.4 1 23 344 366 344 366 0.96
10 19 9.4e-05 0.0013 19.2 1.5 1 23 371 393 371 393 0.99
11 19 2.1 29 5.5 3.3 1 23 398 420 398 420 0.97
12 19 0.024 0.34 11.6 3.8 1 23 425 447 425 447 0.99
13 19 0.17 2.4 8.9 0.6 1 23 452 474 452 474 0.97
14 19 0.00037 0.0052 17.3 2.7 1 23 479 501 479 501 0.99
15 19 0.17 2.4 8.9 0.6 1 23 506 528 506 528 0.97
16 19 0.00049 0.0069 16.9 2.8 1 23 533 555 533 555 0.99
17 19 4.1e-05 0.00059 20.3 2.3 1 23 560 582 560 582 0.99
18 19 0.039 0.55 10.9 0.5 1 23 587 609 587 609 0.98
19 19 0.00012 0.0017 18.8 4.0 1 23 614 636 614 636 0.99

Sequence Information

Coding Sequence
ATGAATATGGAACTAGTGGaaagttgtgcaataaaatctgaagtgacTTTAACAGAAACGTTTTCGTTTTCCAGGAAATATGAAGATTGTAAGAGTGCAgaagaattatttaaatgtaagaaaGAAGAAGATCTGGAGGAGCACATGCATATACTTGCTGCACCATTGCAACAATATTCTTATAATGAGTGTGATTTTACAACAACGGAAAAAGAGGTTTCATATTTGTGTAAGGAATACAACTTTGAAACTCAGTTAGAATGTTCCATAAaagagcatttaaatattcacaaCAGAGCTGCTCATAGCTGtaatattgaagaatgtaaGTCTGAGACACCACGCGCTGTCTCTTTGAAAACTCAAAAAGGTGGTAATGAATATATTTGCAATGAGTGTAACTATACcacattaatcaaaaactatcTAAgaaaacatgtgaaaattcatagagATGCCAAATATATCTGCGAGAAGTGTAGCTATAAAACATGGAATAAACATTATTTCACAGCACATGTAAAAAGACACAagggtaatgaatataagtgtaaagcaTGCgagtataaaacagtgcgaaaacgTAATCTACAatcacatatgaaaattcatacaggtgacaaatataactGTAATGAATGCGAGTATAAAACTTTCTGggaaaataatctaaaaaaccatgtcaaaattcatacaggtgacgaatataagtgtaacgcatgcaactataaaacagtgcggaaaggtAATCTAAAAtctcatatgaaaattcatacaggtgacaaatacaACTGTCATGAATGTCATTATCAAACAGTGTGGAAACAActtctaaaagaacatgtcaaaattcatacaggtgtcgaatataagtgtaaacaatgcaagtataaaacaatgcaaaaaacTACTCTAATATCACATacgaaaattcatacaggtatcaaatataactgtaaagagtgtgattataaaacagtgtggaaacaacttctaaaagaacatgtcaaaattcatacaggtgacgaatataagtgtaaagagtgcgAGTATAAAACTTTCTGggaaaataatctaaaaaaccatgtcaaaattcatacaggtgacgaatataagtgtaacgcatgcaactataaaacagtgcggaaaggtAATCTAAAAtctcatatgaaaattcatacaggtgacaaatacaACTGTCATGAATGTCATTATCAAACAGTGTGGAAACAActtctaaaagaacatgtcaaaattcatacaggtgtcgaatataagtgtaaacaatgcaagtataaaacaatgcaaaaaacTACTCTAATATCACATacgaaaattcatacaggtatcaaatataactgtaaagagtgtgattataaaacagtgtggaaacaacttctaaaagaacatgtcaaaattcatacaggtgacgaatataagtgtaaagagtgcgAGTATAAAACAATGCGAAAAACTAATCTAATATCACATATGAAAAATCATACAGGTATCAAATATAactgtaaagagtgtgattataaaacagtgtggaaacaacttctaaaagaacatgtcaaaattcatacaggtgagaaatataagtgtaaacaatgcgattataaaacaatgcgAAAAACTACTCTAATatcacatatgaaaattcatacaggtgacgaatataagtgtaaagaatgcgagtataaaacagtgcagaaaaataatctaaaatcacatatgaaaattcatacaggtgacgaatataagtgtaaagaatgtgattataaaactgcgtggcaaaatcttctaaaggaacatgtcaaaattcatacaggtgacgaatataagtgtagagaatgtgattataaaacagtgaagaAGTATAATCTAAAATCACATATGAAAAGACACAAGTGA
Protein Sequence
MNMELVESCAIKSEVTLTETFSFSRKYEDCKSAEELFKCKKEEDLEEHMHILAAPLQQYSYNECDFTTTEKEVSYLCKEYNFETQLECSIKEHLNIHNRAAHSCNIEECKSETPRAVSLKTQKGGNEYICNECNYTTLIKNYLRKHVKIHRDAKYICEKCSYKTWNKHYFTAHVKRHKGNEYKCKACEYKTVRKRNLQSHMKIHTGDKYNCNECEYKTFWENNLKNHVKIHTGDEYKCNACNYKTVRKGNLKSHMKIHTGDKYNCHECHYQTVWKQLLKEHVKIHTGVEYKCKQCKYKTMQKTTLISHTKIHTGIKYNCKECDYKTVWKQLLKEHVKIHTGDEYKCKECEYKTFWENNLKNHVKIHTGDEYKCNACNYKTVRKGNLKSHMKIHTGDKYNCHECHYQTVWKQLLKEHVKIHTGVEYKCKQCKYKTMQKTTLISHTKIHTGIKYNCKECDYKTVWKQLLKEHVKIHTGDEYKCKECEYKTMRKTNLISHMKNHTGIKYNCKECDYKTVWKQLLKEHVKIHTGEKYKCKQCDYKTMRKTTLISHMKIHTGDEYKCKECEYKTVQKNNLKSHMKIHTGDEYKCKECDYKTAWQNLLKEHVKIHTGDEYKCRECDYKTVKKYNLKSHMKRHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-