Lyun000889.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010000125.1:492812-494141[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8e-05 0.00026 21.4 2.2 1 23 70 92 70 92 0.99 2 13 0.028 0.4 11.4 1.0 1 23 97 119 97 119 0.97 3 13 4.3e-05 0.00062 20.2 2.3 1 23 124 146 124 146 0.99 4 13 0.063 0.9 10.2 1.3 1 23 151 173 151 173 0.97 5 13 0.0047 0.067 13.8 2.9 1 23 178 200 178 200 0.99 6 13 0.001 0.015 15.9 3.5 1 23 205 227 205 227 0.97 7 13 4.3e-05 0.00061 20.2 2.6 1 23 232 254 232 254 0.99 8 13 0.075 1.1 10.0 2.1 1 23 259 281 259 281 0.98 9 13 0.025 0.35 11.5 2.1 1 23 286 308 286 308 0.99 10 13 0.27 3.8 8.3 1.4 1 19 313 331 313 334 0.93 11 13 0.0004 0.0056 17.2 1.4 1 23 340 362 340 362 0.98 12 13 0.00046 0.0065 17.0 6.0 1 23 367 389 367 389 0.98 13 13 0.0042 0.059 14.0 1.9 1 23 394 416 394 416 0.99
Sequence Information
- Coding Sequence
- ATGGATGTTGATTATAATGAAAGTTACCCAATAAAATCAGATATAACTGTACAGGAAACATTCTCATATTGTGGTGAAAATTATGAAGATTGTTGGAATGAAGAATTGAAACCAGATCctgtttatttagaaaaatcttttataaaatgcGAAGAAGAGGTTAATGTTATAGAGCTTGCCAATGTACGTACTGTACCTGtgaatgaatataagtgtatggaatgtgattataaaacatcacggAAACAGAATCTTACCCAACATTTGAGAATTCATAGTGCTCATAAGTATATGTGtacggaatgtgattataaaacacgatggaaacagagtctaaagcaacatttagaaattcatagtgatcatgaatataaatgtatggaatgtgattataaaacatcacggAAACAGAATCTTAcgcaacatttgaaaattcattgtggtcatgaatataagtgtaacgaatgtgattataaaacatcatggaAACAGAATATAAAGCAACATTTGACAATTCATAGTgatcatgaatataagtgtaaggaatgtgattataaaacacgatGGAAAAAGAGCCTAAaacaacatttgaaaattcattgtgatcatgaatataagtgtaacaaatgtgattataaaacatcacagAAACAAGATTTAAAGCAACATTTCACAATTCATAGTgatcatgaatataagtgtatggaatgtgattataaaacatcacggAAACAGAATCTTAagcaacatttgaaaattcattgtggtcatgaatataagtgtaaggaatgtgattataaaacatcgtGGAAACAGAATATAAAGCAACATTTGACAATGCATAGTgatcatgaatataagtgtaaggaatgtgagtataaaacaCGATGGAAAAAGGGTCTAAaacaacatttgaaaattcatagtggtcatgaatataagtgtaacgaatgtgattataaaacattacagAAACAAGAATTAAAGCAACATTTCACAAATTATAGTGATCATGCATATAAGTGtatggaatgtgattataaaacatcattgaaacagaatctaaagcgACATTTGGAAATTCATAGTGATCATGAATTtaagtgtacagaatgtgattataaaacatcacggAAACAGAATTTCATGCATCATTTGAGAAATCATAGTGGTCGtgtatataagtgtaaagagtgtgatcataaaacagcatggaaaaataatttaaaagtacatattaaaattcatatgcGTGATAAACATATAAAATGA
- Protein Sequence
- MDVDYNESYPIKSDITVQETFSYCGENYEDCWNEELKPDPVYLEKSFIKCEEEVNVIELANVRTVPVNEYKCMECDYKTSRKQNLTQHLRIHSAHKYMCTECDYKTRWKQSLKQHLEIHSDHEYKCMECDYKTSRKQNLTQHLKIHCGHEYKCNECDYKTSWKQNIKQHLTIHSDHEYKCKECDYKTRWKKSLKQHLKIHCDHEYKCNKCDYKTSQKQDLKQHFTIHSDHEYKCMECDYKTSRKQNLKQHLKIHCGHEYKCKECDYKTSWKQNIKQHLTMHSDHEYKCKECEYKTRWKKGLKQHLKIHSGHEYKCNECDYKTLQKQELKQHFTNYSDHAYKCMECDYKTSLKQNLKRHLEIHSDHEFKCTECDYKTSRKQNFMHHLRNHSGRVYKCKECDHKTAWKNNLKVHIKIHMRDKHIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -