Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010000668.1:1362833-1364581[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.6 65 4.4 6.5 1 23 180 202 180 202 0.98

2 14 1.7 24 5.7 0.7 1 23 207 229 207 229 0.81

3 14 7.1e-05 0.001 19.5 0.8 1 23 234 256 234 256 0.99

4 14 0.00015 0.0021 18.6 1.7 1 23 261 283 261 283 0.99

5 14 0.00072 0.01 16.4 2.1 1 23 288 310 288 310 0.98

6 14 0.02 0.28 11.8 2.1 1 23 315 337 315 337 0.98

7 14 0.024 0.35 11.6 1.0 1 23 342 364 342 364 0.98

8 14 0.086 1.2 9.8 0.7 1 23 369 391 369 391 0.97

9 14 0.064 0.91 10.2 0.9 1 23 396 418 396 418 0.98

10 14 0.00041 0.0057 17.1 0.9 1 23 423 445 423 445 0.99

11 14 0.00011 0.0016 18.9 2.1 1 23 450 472 450 472 0.99

12 14 0.00036 0.0051 17.3 0.9 1 23 477 499 477 499 0.99

13 14 0.0092 0.13 12.9 6.1 1 23 504 526 504 526 0.98

14 14 0.00016 0.0023 18.4 1.0 1 23 531 553 531 553 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.6	65	4.4	6.5	1	23	180	202	180	202	0.98
2	14	1.7	24	5.7	0.7	1	23	207	229	207	229	0.81
3	14	7.1e-05	0.001	19.5	0.8	1	23	234	256	234	256	0.99
4	14	0.00015	0.0021	18.6	1.7	1	23	261	283	261	283	0.99
5	14	0.00072	0.01	16.4	2.1	1	23	288	310	288	310	0.98
6	14	0.02	0.28	11.8	2.1	1	23	315	337	315	337	0.98
7	14	0.024	0.35	11.6	1.0	1	23	342	364	342	364	0.98
8	14	0.086	1.2	9.8	0.7	1	23	369	391	369	391	0.97
9	14	0.064	0.91	10.2	0.9	1	23	396	418	396	418	0.98
10	14	0.00041	0.0057	17.1	0.9	1	23	423	445	423	445	0.99
11	14	0.00011	0.0016	18.9	2.1	1	23	450	472	450	472	0.99
12	14	0.00036	0.0051	17.3	0.9	1	23	477	499	477	499	0.99
13	14	0.0092	0.13	12.9	6.1	1	23	504	526	504	526	0.98
14	14	0.00016	0.0023	18.4	1.0	1	23	531	553	531	553	0.98

Sequence Information

Coding Sequence: ATGGATATCGACTCAGTAGACTCTATTGAAAGTGGTgttataaaatcagaagtgattttagcagagacattttctttttgtagtagATACGATCAAGattGTGAGAGTAAGGGACTGAAACCGGAACCAGTAAATTATGAAGATTTGCTTAAacctaaagaagaaaatgatctgGTAGAACCCACAGATGCACATATACATGCTGTTCCGTTACAAGAAGATTTTTGCAATGActctaattttataacaattggaGAAAATTCTCTAATAGAACTTCTGAAAGCTCCTGAAAGCGTTAAACACTCATATAAGGAATGTAACTTTGTAACCCAGTTAAAAAGTTCTATAAACGAGCATACAACAATTTACAATGataatattgaagaatgtaattttaagacgtCACAGATTTTCTCCATATCACCACAGTTGAAAACTCCAAGAAATGGGAATGAATATGTttataatgaatgtaattacactacattgaacaaaaattatccAAAGAAACATGTGAAGATTCACAACAAAACTGCATATAGTTGcgagaaatgtgattataatacacATTGGAAAAGTCACTTCACAACACATACAAAAATCCAttcaggtaatgaatataagtgtaaagaatgtgattacaaaacagtatgGAACAATTCTGCCAAGGAACATGTCAaacttcatacaggtgataGATATAAGTGTctagaatgtgattttaaaacagtacggaaaGGTAATCTAaatcaacatatcaaaattcatactggtgacaattataagtgcaaagaatgtgattataaaacagtacggaaaaattctctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtacagaatgcaattataaaacagtacggaaaaaTTCTCTCAAGGATCATGTCAaacttcatacaggtgatgaacataagtgtctagaatgtgattttaaaacagtgcaGAAGAGTATACTAAATcgacatatcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaacagtatggaaaaattctctaaaggaacatgtgaaaattcatactggtgacaattATAAGTGTACAGAGTGTGATTATAacacagtatggaaaaattctctCAAGGAACATGTTAAACTTCATACagatgataaatataagtgtctagaatgtgattttaaaactgtatggaaaggtaatctaaatcaacatatcaaatttcatACTGGTAACAAATATAAGTGTggagaatgtgattataaaacagtacgaaaaaattatttaagggaacatgtcaaaattcacacaggtgatgaatataagtgtaaagaatgtgattataaaacagtacggaaaaattctctaaagcaacatgtcaaaattcatacgggtgacgaatataagtgtcaagaatgtgattataaaacagtacgaaaaaATTCTCTaatggaacatgtcaaaattcatacaggtgatgaatataagtgcaaacaatgcaattataaaacagtacggaaaaaTTCTCTCAAGCAACACGTCAAAcatcatacaggtgataaatatcAGTGTctagaatgtgattttaaaactgtacggaaaagtgatctaaagcaacatgtcaaaattcatagtgTCAAGATTCATGTAGGTGATTTTAACACACTATAA
Protein Sequence: MDIDSVDSIESGVIKSEVILAETFSFCSRYDQDCESKGLKPEPVNYEDLLKPKEENDLVEPTDAHIHAVPLQEDFCNDSNFITIGENSLIELLKAPESVKHSYKECNFVTQLKSSINEHTTIYNDNIEECNFKTSQIFSISPQLKTPRNGNEYVYNECNYTTLNKNYPKKHVKIHNKTAYSCEKCDYNTHWKSHFTTHTKIHSGNEYKCKECDYKTVWNNSAKEHVKLHTGDRYKCLECDFKTVRKGNLNQHIKIHTGDNYKCKECDYKTVRKNSLKEHVKIHTGDEYKCTECNYKTVRKNSLKDHVKLHTGDEHKCLECDFKTVQKSILNRHIKIHTGDKYKCKECDYKTVWKNSLKEHVKIHTGDNYKCTECDYNTVWKNSLKEHVKLHTDDKYKCLECDFKTVWKGNLNQHIKFHTGNKYKCGECDYKTVRKNYLREHVKIHTGDEYKCKECDYKTVRKNSLKQHVKIHTGDEYKCQECDYKTVRKNSLMEHVKIHTGDEYKCKQCNYKTVRKNSLKQHVKHHTGDKYQCLECDFKTVRKSDLKQHVKIHSVKIHVGDFNTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -