Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010000380.1:967445-978650[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.048 0.67 10.6 1.8 1 23 170 192 170 192 0.99

2 23 0.0051 0.072 13.7 1.1 1 23 224 246 224 246 0.98

3 23 1.2 17 6.2 2.1 1 23 251 273 251 273 0.97

4 23 0.061 0.87 10.3 0.7 1 23 305 327 305 327 0.98

5 23 0.0023 0.032 14.8 1.7 1 23 332 354 332 354 0.99

6 23 0.37 5.3 7.8 1.2 1 23 359 381 359 381 0.97

7 23 0.068 0.97 10.1 2.2 1 23 386 408 386 408 0.98

8 23 0.00011 0.0015 19.0 3.1 1 23 413 435 413 435 0.99

9 23 0.37 5.3 7.8 1.2 1 23 440 462 440 462 0.97

10 23 0.098 1.4 9.7 2.2 1 23 467 489 467 489 0.98

11 23 4.5e-05 0.00063 20.2 1.5 1 23 494 516 494 516 0.99

12 23 0.0045 0.064 13.9 1.5 1 23 521 543 521 543 0.99

13 23 0.035 0.49 11.1 1.1 1 23 548 570 548 570 0.98

14 23 1.1 15 6.4 0.7 1 23 712 734 712 734 0.97

15 23 0.071 1 10.1 1.0 1 23 766 788 766 788 0.97

16 23 1.3 19 6.1 4.6 1 23 793 815 793 815 0.98

17 23 0.087 1.2 9.8 1.7 1 23 820 842 820 842 0.98

18 23 0.047 0.67 10.7 0.8 1 23 847 869 847 869 0.98

19 23 0.09 1.3 9.8 0.8 1 23 874 896 874 896 0.98

20 23 0.033 0.47 11.1 1.2 1 23 901 923 901 923 0.98

21 23 0.05 0.71 10.6 1.0 1 23 928 950 928 950 0.98

22 23 0.066 0.94 10.2 1.6 1 23 955 977 955 977 0.97

23 23 6.9e-05 0.00097 19.6 1.0 1 23 982 1004 982 1004 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.048	0.67	10.6	1.8	1	23	170	192	170	192	0.99
2	23	0.0051	0.072	13.7	1.1	1	23	224	246	224	246	0.98
3	23	1.2	17	6.2	2.1	1	23	251	273	251	273	0.97
4	23	0.061	0.87	10.3	0.7	1	23	305	327	305	327	0.98
5	23	0.0023	0.032	14.8	1.7	1	23	332	354	332	354	0.99
6	23	0.37	5.3	7.8	1.2	1	23	359	381	359	381	0.97
7	23	0.068	0.97	10.1	2.2	1	23	386	408	386	408	0.98
8	23	0.00011	0.0015	19.0	3.1	1	23	413	435	413	435	0.99
9	23	0.37	5.3	7.8	1.2	1	23	440	462	440	462	0.97
10	23	0.098	1.4	9.7	2.2	1	23	467	489	467	489	0.98
11	23	4.5e-05	0.00063	20.2	1.5	1	23	494	516	494	516	0.99
12	23	0.0045	0.064	13.9	1.5	1	23	521	543	521	543	0.99
13	23	0.035	0.49	11.1	1.1	1	23	548	570	548	570	0.98
14	23	1.1	15	6.4	0.7	1	23	712	734	712	734	0.97
15	23	0.071	1	10.1	1.0	1	23	766	788	766	788	0.97
16	23	1.3	19	6.1	4.6	1	23	793	815	793	815	0.98
17	23	0.087	1.2	9.8	1.7	1	23	820	842	820	842	0.98
18	23	0.047	0.67	10.7	0.8	1	23	847	869	847	869	0.98
19	23	0.09	1.3	9.8	0.8	1	23	874	896	874	896	0.98
20	23	0.033	0.47	11.1	1.2	1	23	901	923	901	923	0.98
21	23	0.05	0.71	10.6	1.0	1	23	928	950	928	950	0.98
22	23	0.066	0.94	10.2	1.6	1	23	955	977	955	977	0.97
23	23	6.9e-05	0.00097	19.6	1.0	1	23	982	1004	982	1004	0.99

Sequence Information

Coding Sequence: ATGTCTGCAAATAATCTAAAACGACATAGCGTACTGCATGCTGGTGATGAACATAAGTGTAAcaaatgcgattataaaacagtatggaaaaaccatctaaaagaaaatgtcGAAATTTATACAGCTACTACAGATTTCGTTATACGCCTACCGACACGACGTCTCGAAGCTAAGTTTATTGTCAACGTTAACTTCACAGTTCACACACCTTGTACAATGGATATCCACTCGTTACACTGTATTGAAAATTGTGgtataaaatcagaagtgattttaacagagacATTCTCTTTTTGTGAGAACTACAAAGattGTGTGCTTAATGAACTGAAAAAGGAGTCAGTAAATTACAAAGAATCACTTAaaagtaaagaagaaaataatctGGCAGAACCCATAGATATACATGCTGCTCCGATGCAACAGGATTTTTGTAATGACTGTAATTTGACAACACTTGATGAAAGTTCACAAATAGAACTTTTAAGGGTTACTAAAAATGGCAAATACTCTTGTAGggaatgtaactttacaacgCAGTTAGAAAGTTCTATAAATAAGCATATGAGGACTCACAATGAGGGATATAATATTGAAGAACGTAATTTTAACATGCCACAGATTCTCTCTCTATCACCACAGTTGAATACTCCAAGAAGTGGGAAGAAAtatgtttgtaatgaatgtaattacacaaCATTAAACAAAGATTATTTAAGGAAACATGTGAAGATTCACAAAGGTACTTCATATAGTTGCaagaaatgtgattatattaCATGGAGTAAACGTTACTTTACACaacatgcaaaaattcattttggtaatgaatataagtataaagaatgtaattataaaacaatttggaaAGATTGTCTAGAGCaatatgtcaaaattcatacaagtggtaaatataagtgtacagaatgtgattataaaacgatatGGAAACGTGatttaatgcaacatgtcaaaattcattcaggtgaagagtataagtgtaaagaatgtgattataaaacagtgcggaaaaatcaaataaaggaacatctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatatggaaaaatcttctaaatgaacatttcaaaattcatacaggtgaagaatataagtgtaaagattgtgattataaaacagtgtggaaacatcttctaaaggaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacgatacGGCAAAGTCatttaatgcaacatgtcaaaattcatacaggtgataaatataagtgtaaagaatgtgattataaaacaatatggaaaaatcttctaaatgaacatttcaaaattcatacaggtgaagaatataagtgtaaagaatgtgattataaaacagtgtggaaacatcttctaaaggaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacaatacggaaaagtaatctattacaacatgtcaaaattcatacaggcgtaaaatataagtgtaaagaatgtgattataaaacgataGAGAAAAGGTATCTAATgcagcatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacgatacggaaaaatattttaatgcaacatgtcaaaattcatacagatgataaatataagtgtaaagaatgtgattttaaaacagtgtggaaagGTTTCGTTATACGCCTACCGACACCAACGACAACGAGGCTAATTGTTGTCGATGTTAACTTCACAGTTCACACATCTTATGCAATGGATATCGACTCGTTAgactttattgaaagttgtgctataaaatcagaagtgattttaacggagacattttctttttgtggaaaatacGAAGatTGTGGGAGTAAGGAACTGAAAACGGAGCCTGTAAATTACGAAGAATCGCTTAAacgtaaagaagaaaatgaactGGCAGAACCCATAGGTACACATGCTGATCCGATACAAGATTTTTATGATGACTCTAATTTTACAACAATTGGAGAAACTTTGCAAATACCACTTTTGAGAGTTactaaaaacgttaaatacTATTGCAAGGAATGTAACTCTACGACCCAGTTAGGAAGTTCTATAAAAGAGCATATGAGGATTCACAATGACGGAAGTAATATTGAAGAAGGTAATTTTAAGATGTCACAGATTTTCTCTCCATCACCACAGTTGAAAACTCCAAGAAGTGAGAATGAAtatgtttgtaatgaatgtaattacaccaccttgaacaaaaattatctaaagaaCCATGTGACGATTCACAAAGGTGCTTCATATAGTTGcgagaaatgtgattataatacacGGTGGAAACATCACTTCACAGCACATGCAAAAATTCattctggtaatgaatataagtgtaaaaaatgtgattataaaacaatatggaaaaatcttctaaaggaacatctcaaaattcataccggtggcaaatataagtgtaaacaatgtgattataaaacagcatggagaaataatctaaacatacatgtcaaaattcatacaggtgaaggatataagtgtaaagaatgtgattataaaacaatatggaaaaatcttctaaaggaacatgtcaaaattcatactggtgatgaatataagtgtaaagaatgtgactataaaacaatatggaaaaattctctaaaggaacatctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacaatatggaaaaatcttctaaaggaacatctcaaaattcatactggtgatgaatataagtgtaaagaatgtgattataaaacattacggaaaatttatttaatgcagcatgtcaaaattcatagagatgatgaatataagtgtaaagtatgtgattataaaacagtgcggaaaggtaatttaaaggaacatgtcaaaattcatacaactgaaatataa
Protein Sequence: MSANNLKRHSVLHAGDEHKCNKCDYKTVWKNHLKENVEIYTATTDFVIRLPTRRLEAKFIVNVNFTVHTPCTMDIHSLHCIENCGIKSEVILTETFSFCENYKDCVLNELKKESVNYKESLKSKEENNLAEPIDIHAAPMQQDFCNDCNLTTLDESSQIELLRVTKNGKYSCRECNFTTQLESSINKHMRTHNEGYNIEERNFNMPQILSLSPQLNTPRSGKKYVCNECNYTTLNKDYLRKHVKIHKGTSYSCKKCDYITWSKRYFTQHAKIHFGNEYKYKECNYKTIWKDCLEQYVKIHTSGKYKCTECDYKTIWKRDLMQHVKIHSGEEYKCKECDYKTVRKNQIKEHLKIHTGDEYKCKECDYKTIWKNLLNEHFKIHTGEEYKCKDCDYKTVWKHLLKEHVKIHTGDEYKCKECDYKTIRQSHLMQHVKIHTGDKYKCKECDYKTIWKNLLNEHFKIHTGEEYKCKECDYKTVWKHLLKEHVKIHTGDEYKCKECDYKTIRKSNLLQHVKIHTGVKYKCKECDYKTIEKRYLMQHVKIHTGDEYKCKECDYKTIRKNILMQHVKIHTDDKYKCKECDFKTVWKGFVIRLPTPTTTRLIVVDVNFTVHTSYAMDIDSLDFIESCAIKSEVILTETFSFCGKYEDCGSKELKTEPVNYEESLKRKEENELAEPIGTHADPIQDFYDDSNFTTIGETLQIPLLRVTKNVKYYCKECNSTTQLGSSIKEHMRIHNDGSNIEEGNFKMSQIFSPSPQLKTPRSENEYVCNECNYTTLNKNYLKNHVTIHKGASYSCEKCDYNTRWKHHFTAHAKIHSGNEYKCKKCDYKTIWKNLLKEHLKIHTGGKYKCKQCDYKTAWRNNLNIHVKIHTGEGYKCKECDYKTIWKNLLKEHVKIHTGDEYKCKECDYKTIWKNSLKEHLKIHTGDEYKCKECDYKTIWKNLLKEHLKIHTGDEYKCKECDYKTLRKIYLMQHVKIHRDDEYKCKVCDYKTVRKGNLKEHVKIHTTEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -