Lyun009769.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010001790.1:258242-264815[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.077 1.1 10.0 1.6 1 22 65 86 65 86 0.96 2 20 0.045 0.64 10.7 3.6 1 23 144 166 144 166 0.98 3 20 0.0012 0.017 15.7 1.2 1 23 172 194 172 194 0.99 4 20 0.004 0.057 14.0 0.9 2 23 200 221 199 221 0.97 5 20 0.066 0.93 10.2 1.7 2 23 227 248 226 248 0.97 6 20 0.0058 0.082 13.5 0.3 2 23 254 275 253 275 0.94 7 20 0.038 0.54 10.9 4.5 2 23 281 302 280 302 0.96 8 20 0.035 0.49 11.1 0.7 2 23 308 329 307 329 0.97 9 20 0.0033 0.046 14.3 1.9 2 23 335 356 334 356 0.96 10 20 0.0044 0.063 13.9 2.0 2 23 362 383 361 383 0.96 11 20 0.029 0.41 11.3 1.2 2 23 389 410 388 410 0.97 12 20 0.038 0.54 10.9 4.4 2 23 416 437 415 437 0.96 13 20 0.029 0.41 11.3 1.2 2 23 443 464 442 464 0.97 14 20 0.003 0.043 14.4 1.7 2 23 470 491 469 491 0.96 15 20 0.029 0.41 11.3 1.2 2 23 497 518 496 518 0.97 16 20 0.038 0.54 10.9 4.4 2 23 524 545 523 545 0.96 17 20 0.029 0.41 11.3 1.2 2 23 551 572 550 572 0.97 18 20 0.038 0.54 10.9 4.4 2 23 578 599 577 599 0.96 19 20 0.029 0.41 11.3 1.2 2 23 605 626 604 626 0.97 20 20 0.003 0.043 14.4 1.7 2 23 632 653 631 653 0.96
Sequence Information
- Coding Sequence
- ATGGATGTTGATTGCAATGAAAGTTATTCAATAAAATCCGAAGTGATtataacagaaacattttctttttgtgaagAATTCAGAGGTTATGGgaataaagaattgaaatcaGATCCAGTAGATATCGAAGAATCCAAGGAAGAAGATAACCTTGAAGAGGATGTGGATATATGTGCTGATCCTGTTCAGCAATATGCTTGTAATGattgtaactttaaaacaaCAGCAAAGGATTGTCTAATAAAACATctgaaaactattaaaaacatGCAACAtttgtgtaaaaaatgtaactttaaaactttGTTGGAATGTTCCTTtaatgaacatttaagaatttgtCATGGAGTAGATTATAAACGTAATGTTAAGCCACCtcaaattatttctgtaacacaacaattgaaaactgcaaaaagtGGTGATTGCTATATTTGTAAtcaatgtgattttaaaacgcAATCGAAACATAAACtaaaagtacatataaataatcatatagGTAATAAGTactataagtgtaaggaatgtgattttaaaactgtgtgGAAATCTAATCTTAACACACATATGAATATTCACACAGGTAATgaattgaagtgtaaagaatgtaactacAAAACTGTGTGGAAATCTAATCTTATtacacatatgaaaattcacacaggtaatgaattgaagtgtaaagaatgtgactacaaaactgtGTGGAACCATTTATTAaaagaacatatgaaaattcacacaggaAATGAATTGAAGTGTATAGACTGTGACTACAAAACTGTGGTGAAATCTAATCTTATcacacatatgaaaattcacacaggtgataaattgaaatgtaaagaatgtgactacaaaactcttAGAAAATGTAATCTTACTACACATATGAAGatccatacaggtgatgaattggagtgtaaagaatgtgactacaaaactgtgtggaaatataaattaaaagaacatatgaaaattcacacaggtgatgaattaaagtgtaaagaatgtgactacaaaactcttACGAAATATAATCTTAAattgcatatgaaaattcacacaggtaatgtattgaagtgtaaagaatgtgattacaaaactcTTAGGAGATATAATCTTAAattgcatatgaaaattcacacaggtaaagaattaaagtgtaaagaatgtgactacaaaactgtgtggaaatataaattaaaagaacatatgaaaattcatacaggtgatgaattgaagtgtaaagaatgtgactacaaaactcttAGGAAATGTAATCTTAATACACATATGAAGatccatacaggtgatgaactgaagtgtaaagaatgtgactacaaaactgtgtggaaatataaattaaaagaacatatgaaaattcacacaggtgatgaattaaagtgtaaagaatgtgactacaaaactcttAGGAAATATAATCTTAAATTGCATATGAATATTCACACAGgtgatgaattgaagtgtaaagaatgtgactacaaaactgtgtggaaatataaattaaaagaacatatgaaaattcatacaggtgatgaattgaagtgtaaagaatgtgactacaaaactcttAGGAAATGTAATCTTAATACACATATGAAGAtccatacaggtaaagaattaaagtgtaaagaatgtgactacaaaactgtgtggaaatataaattaaaagaacatatgaaaattcatacaggtgatgaattgaagtgtaaagaatgtgactacaaaactcttAGGAAATGTAATCTTAATACACATATGAAGatccatacaggtgatgaattgaagtgtaaagaatgtgactacaaaactgtgtggaaatataaattaaaagaacatatgaaaattcacacaggtgatgaattaaagtgtaaagaatgtgactacaaaactcttAGAAAATATAATCTTAAATTGCATATGAATATTCACACAGtggattccataccaacaagttgtgttcaactagcgaaggaacaaattattaagtatagcgatcccaaatacaatatcaacgatttgaagactggggattgtgaaacaatgttacttaatcaaacaatttattatttaaataaatctaaaagtaaatggatcagtgtaggattgtactatccgttcgaattcgcttctgttgtgaagatattcgggaggtctaagcaatacgttatatttaaagaagaggaatggatacaattcgaacaacgagaaaatattaacaaaggtcctcctctttatgccgaaAAAGGCACAATAGTGCCTTTCGGGTTGTATATCAAATATGATGTACAACCTGAAAggcgtattcaagaacaaggtcagaagcgtgttaaaaaacagcagGGGagctatatgtggatgttgtatgcagaacataattggaccaaagccatcgatttaaaatcggcagtagaaagtttatatgaaaaactcggtgctttagaatttgatgctgatcatgaagcaatttatgggatagaataa
- Protein Sequence
- MDVDCNESYSIKSEVIITETFSFCEEFRGYGNKELKSDPVDIEESKEEDNLEEDVDICADPVQQYACNDCNFKTTAKDCLIKHLKTIKNMQHLCKKCNFKTLLECSFNEHLRICHGVDYKRNVKPPQIISVTQQLKTAKSGDCYICNQCDFKTQSKHKLKVHINNHIGNKYYKCKECDFKTVWKSNLNTHMNIHTGNELKCKECNYKTVWKSNLITHMKIHTGNELKCKECDYKTVWNHLLKEHMKIHTGNELKCIDCDYKTVVKSNLITHMKIHTGDKLKCKECDYKTLRKCNLTTHMKIHTGDELECKECDYKTVWKYKLKEHMKIHTGDELKCKECDYKTLTKYNLKLHMKIHTGNVLKCKECDYKTLRRYNLKLHMKIHTGKELKCKECDYKTVWKYKLKEHMKIHTGDELKCKECDYKTLRKCNLNTHMKIHTGDELKCKECDYKTVWKYKLKEHMKIHTGDELKCKECDYKTLRKYNLKLHMNIHTGDELKCKECDYKTVWKYKLKEHMKIHTGDELKCKECDYKTLRKCNLNTHMKIHTGKELKCKECDYKTVWKYKLKEHMKIHTGDELKCKECDYKTLRKCNLNTHMKIHTGDELKCKECDYKTVWKYKLKEHMKIHTGDELKCKECDYKTLRKYNLKLHMNIHTVDSIPTSCVQLAKEQIIKYSDPKYNINDLKTGDCETMLLNQTIYYLNKSKSKWISVGLYYPFEFASVVKIFGRSKQYVIFKEEEWIQFEQRENINKGPPLYAEKGTIVPFGLYIKYDVQPERRIQEQGQKRVKKQQGSYMWMLYAEHNWTKAIDLKSAVESLYEKLGALEFDADHEAIYGIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -