Lyun000876.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000125.1:340201-342148[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.62 8.8 7.1 1.3 1 21 65 85 65 86 0.95
2 17 0.32 4.6 8.0 0.7 1 17 155 171 155 172 0.93
3 17 5.4e-05 0.00077 19.9 1.7 1 23 182 204 182 204 0.99
4 17 2.6e-05 0.00037 20.9 2.4 1 23 209 231 209 231 0.99
5 17 0.00023 0.0032 17.9 1.5 1 23 236 258 236 258 0.99
6 17 0.011 0.15 12.7 1.3 1 23 263 285 263 285 0.98
7 17 0.0001 0.0015 19.0 6.0 1 23 290 312 290 312 0.99
8 17 0.041 0.58 10.8 1.2 1 23 317 339 317 339 0.99
9 17 0.035 0.5 11.0 1.0 1 23 371 393 371 393 0.98
10 17 7.7e-05 0.0011 19.4 2.5 1 23 398 420 398 420 0.98
11 17 0.007 0.099 13.3 2.3 1 23 425 447 425 447 0.99
12 17 0.47 6.7 7.5 3.1 1 23 452 474 452 474 0.98
13 17 0.0009 0.013 16.1 1.9 1 23 479 501 479 501 0.99
14 17 0.00037 0.0052 17.3 3.3 1 23 506 528 506 528 0.99
15 17 0.011 0.15 12.7 1.3 1 23 533 555 533 555 0.98
16 17 0.02 0.29 11.8 0.5 1 23 560 582 560 582 0.98
17 17 0.052 0.73 10.5 1.8 1 23 587 609 587 609 0.98

Sequence Information

Coding Sequence
ATGGATTTTGattgtaatgaaagttatccaATAAAATCGGAAATAATTGTAAAGGAAACATTTTCACATTGTAGAAATTATGAAGATCATGGGgataaagaattgaaaacagACCCCGGCGATATAGGAAAATCTTTTATATGCAAAGAAGAGGATAATCTTGTGAAGCTCATTGGTGTACCGGTAaatcaatatatttgtaatgaatgtagttttattacaacagaaaaagattgttttaaaCAACACTTGaacattatcaaaaatgtacgctatttttgcaaagaatgtaattttaaaaccctGTTATTGTGTTCCATAAAAGAGCATTTCAGGATTCACAACAGGGTTGTTTGTCGACATActactaaaaaatgtaatttcaagaaatcccaaattttttctttagtaccACACAAACGGGTTGTAAagcaacatttgaaaattcacagtgatcatgaatataactgtaacgattgtgattataaaacagtgcggaaaaacagtttaaaggaaaatatgaaaattgctaGTGGTGACAGTtataagtgcaaggaatgtgattataaaacaatacggaaacagagtctaaaggcacatttaaaaatccatactggtcatgaatataagtgtgaagaatgtgattataaaacaatacagaaACACAATCTAAAGATACATTtaagaattcatactggtgataaatataaatgtaaggaatgtgattatcaaacagtaaaaaaacaaagtctaaaggaacatatgaacattcatactggtgacagatataagtgcaaggaatgtgattacaaaacaatatggaaaaagaatctaaatatacatttaaaactccatactggtgatgaatataaatgtaaagattgtgactataaaacggtgCAAAAACACCATCTAcgggaacatatgaaaattcatactggtgacggaTATAAatgcaaggaatgtgattttaagacaatatggaaacagagtctaaacgtacatttaaaaatgcatactaatgataaatataagtgtgaagaatgtgattttaaaacattatggaaaaacaatctacatgtacatttaaaaatgcatactGGTGAtggatataagtgtaaggaatgtgattataaaacaccatgggaACGAAGTCTAAAGACTCATTtgaaaatccatactggtgatacATATAGCTGTaatgattgtgattataaaacagtgcggaaacaCAGTCTTatggaacatatgaaaattcatactgatgacagatataagtgcaaggaatgtaattataaaacaacatggaaacaaagtctaaaggcacatttaaaaatgcattatggTGACggatataagtgtaaggaatgtgattttaaaacaatatgtaAACAGAGTCTAAACATACATGTAAAAATCCATACTagtgataaatataaatgtgaggaatgtgattacaaaacatcaTGGAAACACAATCTGCAGGTACATTtaagaattcatactggtgataaatataagtgtaaggaatgtgattatcaaacagtaaaaaaacacagcttaaaggaacatatgaacattcatactggtgacagatataagtgcaaggaatgtgattataaaacaatatggaaaaagaatttaaatatacatttaaaactcCATACTAGTGACggatataagtgtaaggaatgtgattataaaacaccatgggaacgaagtctaaaggcacatttgaaaatccatactggtgacgaTTACAAGTGCAAGgagtgtgattttaaaacaatatggaaacagagtctaaagacACATTtgaaaatccatactggtgacaGATATAACTGtgaggaatgtgattttaaaacatcatGGGGAAACACAATCTAA
Protein Sequence
MDFDCNESYPIKSEIIVKETFSHCRNYEDHGDKELKTDPGDIGKSFICKEEDNLVKLIGVPVNQYICNECSFITTEKDCFKQHLNIIKNVRYFCKECNFKTLLLCSIKEHFRIHNRVVCRHTTKKCNFKKSQIFSLVPHKRVVKQHLKIHSDHEYNCNDCDYKTVRKNSLKENMKIASGDSYKCKECDYKTIRKQSLKAHLKIHTGHEYKCEECDYKTIQKHNLKIHLRIHTGDKYKCKECDYQTVKKQSLKEHMNIHTGDRYKCKECDYKTIWKKNLNIHLKLHTGDEYKCKDCDYKTVQKHHLREHMKIHTGDGYKCKECDFKTIWKQSLNVHLKMHTNDKYKCEECDFKTLWKNNLHVHLKMHTGDGYKCKECDYKTPWERSLKTHLKIHTGDTYSCNDCDYKTVRKHSLMEHMKIHTDDRYKCKECNYKTTWKQSLKAHLKMHYGDGYKCKECDFKTICKQSLNIHVKIHTSDKYKCEECDYKTSWKHNLQVHLRIHTGDKYKCKECDYQTVKKHSLKEHMNIHTGDRYKCKECDYKTIWKKNLNIHLKLHTSDGYKCKECDYKTPWERSLKAHLKIHTGDDYKCKECDFKTIWKQSLKTHLKIHTGDRYNCEECDFKTSWGNTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-