Basic Information

Insect: Lamprigera yunnana
Gene Symbol: -
Assembly: GCA_013368075.1
Location: JABVZV010000591.1:675692-677547[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.3 18 6.1 2.6 1 23 82 104 82 104 0.97

2 18 4.8 68 4.3 0.3 12 23 145 156 142 156 0.94

3 18 7.9e-05 0.0011 19.4 3.0 1 23 161 183 161 183 0.98

4 18 6.7e-05 0.00095 19.6 2.3 1 23 188 210 188 210 0.98

5 18 0.081 1.2 9.9 5.9 1 23 215 237 215 237 0.99

6 18 4e-05 0.00057 20.3 0.6 1 23 242 264 242 264 0.99

7 18 0.12 1.7 9.4 5.6 1 23 269 291 269 291 0.99

8 18 0.00075 0.011 16.3 0.6 1 23 296 318 296 318 0.98

9 18 0.2 2.9 8.7 3.6 1 23 323 345 323 345 0.97

10 18 0.61 8.6 7.2 1.8 1 23 350 372 350 372 0.96

11 18 0.18 2.5 8.8 0.9 1 23 377 399 377 399 0.97

12 18 0.033 0.46 11.2 0.4 1 23 404 426 404 426 0.97

13 18 1.2 17 6.2 1.5 1 23 431 453 431 453 0.98

14 18 0.053 0.74 10.5 0.6 1 23 458 480 458 480 0.98

15 18 9.3e-06 0.00013 22.3 1.1 1 23 498 520 498 520 0.99

16 18 0.0051 0.072 13.7 3.9 1 23 525 547 525 547 0.99

17 18 0.015 0.21 12.2 1.9 1 23 552 574 552 574 0.98

18 18 0.044 0.63 10.7 1.9 1 23 579 601 579 601 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.3	18	6.1	2.6	1	23	82	104	82	104	0.97
2	18	4.8	68	4.3	0.3	12	23	145	156	142	156	0.94
3	18	7.9e-05	0.0011	19.4	3.0	1	23	161	183	161	183	0.98
4	18	6.7e-05	0.00095	19.6	2.3	1	23	188	210	188	210	0.98
5	18	0.081	1.2	9.9	5.9	1	23	215	237	215	237	0.99
6	18	4e-05	0.00057	20.3	0.6	1	23	242	264	242	264	0.99
7	18	0.12	1.7	9.4	5.6	1	23	269	291	269	291	0.99
8	18	0.00075	0.011	16.3	0.6	1	23	296	318	296	318	0.98
9	18	0.2	2.9	8.7	3.6	1	23	323	345	323	345	0.97
10	18	0.61	8.6	7.2	1.8	1	23	350	372	350	372	0.96
11	18	0.18	2.5	8.8	0.9	1	23	377	399	377	399	0.97
12	18	0.033	0.46	11.2	0.4	1	23	404	426	404	426	0.97
13	18	1.2	17	6.2	1.5	1	23	431	453	431	453	0.98
14	18	0.053	0.74	10.5	0.6	1	23	458	480	458	480	0.98
15	18	9.3e-06	0.00013	22.3	1.1	1	23	498	520	498	520	0.99
16	18	0.0051	0.072	13.7	3.9	1	23	525	547	525	547	0.99
17	18	0.015	0.21	12.2	1.9	1	23	552	574	552	574	0.98
18	18	0.044	0.63	10.7	1.9	1	23	579	601	579	601	0.98

Sequence Information

Coding Sequence: ATGGATGTTGaaagttgtgcaataaaatctgaagtgattttaacagaatcATTTTCGTTTCCTGGAAAATACGAAGATTGTGGAAATGAAGAACTGAAAACAGAGCCAATAGATTACGAAGAAtcatttaaatgtaaggaagaaAATGCTCCAATGCAAAAGTATTCAAATAGTAAGTGTAATTTTACAGCGATAGAAAGAAattctctaatagaacattGGAAAACTACTAAagatgttcaatatttttgtgaagaatgtaactttacaaccAAGTTAGAATGTTCCATAAAAGATCATTTAAGGATTCACAATGGAGAAGAAAATAGATATATTATTgaacaatgtaattttaagacgtCGCAGATTTTATCTGTAACACCACAGCAGAAAACTTCAAAAACTGGTGGTGAATAtaattataccacgttaaatAAAAGTGATCTACggaaacatgtaaaaatacatACAGATGACAAATTTAactgtaatgaatgtgattacaaaacacaacggaaatataatctaaaaacacacatgaaaattcatatggGCAATGtacataaatgtaaagaatgtggttataaaactGTACGTGAACGTAGTCTAAAAgctcatatgaaaattcatatcggtgatgaatataaatgtaaagaatgtgattataaaacggtgtggaaaCATTGTCTAAAGGTACATATGAAAATGCATataggtaatgaatataagtgtgaagaatgtgattacaaaacagtgcaGGAACGTAGTCTGAAAGCacacatgaaaattcataaaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaacattgtctaaaggaacatatgaaaatacaTACCGGCAATGAgtataattgtaaagaatgtgattacaaaacagtgcgtGAAGGTAGtttaaaagaacatgtcaaaatgcATACAgatgatgagtataagtgtaaagaatgtgagtaCAAGACATTACGGAAACATTATCTaatggaacatgtcaaaattcacacaggtgatgaatataagtgtaataaatgtgattataaaacagtgtggagaGGTCAtataaaggaacatgttaaaattcatacaggtgatgaatataagtgtaaagaatgtaattataaaacagcgtggaaaggtcgtctaaaggaacacgttaaaattcatacaggtgatgtatataagtgcaaagaatgtgattacaaaacattaCAGATAGGTAGTCTAAAggcacatgtcaaaattcatgctgttgttaaatataaatgtaaagaatgtgtaTATGAAACGGCGTGGAAGAAGTGTCTCAACGAACATGTCAggattcatacaggtgatgaatataaatgtaaagaatgtgattataaaaccgtGTGGAAAAATGGTCttaaggaacatgtcaaaattcatacaggtaatcaATGTAAGagtaacaaatataattatgatACAGGttacaaatataagtgtaaagaatgtgattataaaacagtacagaaaagttACCTAAATGCTCATAtaaaaattcatgcaggtgaacaatataaatgtaaagattgtgaatataaaacagtgcggaaaaattgtctaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtgaagaatgtgattataaaacagtgtggaaatatcatctaaaggaacatgtcaaaattcatactggtgatgaatataccTGTAAGGAATGTGGATATAAGACAATTTGGAGATATCGTctggaaaaacatttaaaaaaacatacataa
Protein Sequence: MDVESCAIKSEVILTESFSFPGKYEDCGNEELKTEPIDYEESFKCKEENAPMQKYSNSKCNFTAIERNSLIEHWKTTKDVQYFCEECNFTTKLECSIKDHLRIHNGEENRYIIEQCNFKTSQILSVTPQQKTSKTGGEYNYTTLNKSDLRKHVKIHTDDKFNCNECDYKTQRKYNLKTHMKIHMGNVHKCKECGYKTVRERSLKAHMKIHIGDEYKCKECDYKTVWKHCLKVHMKMHIGNEYKCEECDYKTVQERSLKAHMKIHKGDEYKCKECDYKTVWKHCLKEHMKIHTGNEYNCKECDYKTVREGSLKEHVKMHTDDEYKCKECEYKTLRKHYLMEHVKIHTGDEYKCNKCDYKTVWRGHIKEHVKIHTGDEYKCKECNYKTAWKGRLKEHVKIHTGDVYKCKECDYKTLQIGSLKAHVKIHAVVKYKCKECVYETAWKKCLNEHVRIHTGDEYKCKECDYKTVWKNGLKEHVKIHTGNQCKSNKYNYDTGYKYKCKECDYKTVQKSYLNAHIKIHAGEQYKCKDCEYKTVRKNCLKEHVKIHTGDEYKCEECDYKTVWKYHLKEHVKIHTGDEYTCKECGYKTIWRYRLEKHLKKHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -