Lyun016043.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
Trmt112
Assembly
GCA_013368075.1
Location
JABVZV010002219.1:118995-124308[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.002 0.029 14.9 0.3 1 21 74 94 74 95 0.95
2 14 0.0094 0.13 12.9 0.8 3 23 155 175 154 175 0.96
3 14 0.79 11 6.8 1.7 1 23 180 202 180 202 0.97
4 14 3.9 55 4.6 0.5 1 23 207 229 207 229 0.94
5 14 0.0015 0.021 15.4 1.5 1 23 234 256 234 256 0.99
6 14 0.00012 0.0017 18.8 0.7 1 23 261 283 261 283 0.98
7 14 0.0046 0.065 13.8 1.1 1 23 288 310 288 310 0.99
8 14 0.0036 0.051 14.2 4.1 1 23 315 337 315 337 0.99
9 14 0.0033 0.047 14.3 2.7 1 23 342 364 342 364 0.98
10 14 0.022 0.31 11.7 2.3 1 23 369 391 369 391 0.99
11 14 1.3e-05 0.00018 21.9 0.6 1 23 396 418 396 418 0.98
12 14 0.0024 0.034 14.7 1.6 1 23 423 445 423 445 0.99
13 14 4.2e-05 0.00059 20.3 2.7 1 23 450 472 450 472 0.99
14 14 0.0027 0.038 14.6 2.8 1 23 477 499 477 499 0.99

Sequence Information

Coding Sequence
ATGGATGTCGATTCCAATAAAAATTTCTCCATAAAATCTGAAGTTATCGTTAACGAGACATTTTCAATTTgtggaaaatatgaagATTATGCCCGCGAACAGTTCAAATTAGACCCGGTGGAGTATgaaagcaaagaattaaaattgGAACCGATAGATTTCCAACAACCATTCAAATGCAAGGAAGAAAATAATCTTGTACCTGTTACTTCCACACAATACATTTGCAATGAATGCAACGTAATGACGACAGACAAAAACActctaaaaaaacatttgaaaattatcaaaaatgttcaatacttgtgtaaggaatgtaactttaaaacctGGTTGGAATGTTCAATAAAAGAACATTTGAGGATTCACAATAAAATGGGCGGTACatacatttctaaaaaattttattctaagaCGCAGCAAATTTTCTCTTTAACGCCACAGTTGGAAACTGCAAAAATTtgcaatgaatgtgattataaaacactgtacAAACGTAATCTAAAagcacatatgaaaattcatatggaTGGTGAACATAAATGccaggaatgtgattttaaaacaatatggcAACAGAGTCTTaaagaacatgtaaaaattcatagtggtgatgaatataagtgtatagaatgtgattataaaacaccgtgGAAACTGAGTCTAAAAAATCATATGacaattcatactggtgatgaatataaatgtaaggaatgtgattataaaacaccatggaaacagaatctGAAGTCGCACATGAAGATTCATACTGGTAAAGAATATTTTTGtgatgaatgtgattataaaacagcacaAGAACGGAATCTAAAAAATCACATGAATATTCACACAGGAGAAATATATAAGTGTTcggaatgtaactataaaacagtgtggaaatatTCGCTAAACATACATATGAAGATTCattcaggtgatgaatataagtgcaacgAATGTGACTACAAGACGACATGGAAACATTCTCTAAAAACACATATGAAGATTCATAAAGGTGAactatataaatgtaaggaatgtgactataacaCAGCATgtaaaagtaatctaaaaattCATATGAGTATTCATACGGGTAAACAATATAAGTGTTCagaatgtgaatataaaacggtgtggaaaCATTCTCTAAAAATACATATGAAGATTCATTCAGGtgatttatataaatgtaaggaatgtgactataacaCAGCACGTAATAGTGATCTAAAAATTCACATGAGCATTCATACacgtgaagaatataagtgttcggaatgtgactataaaacggtgtggaaaTATTCTCTAAAAACACATATGAAGATTCAttcgggtgatgaatataagtgcaaagaatgtgattataaaacagtgcggaaaactTATCTAACAAGCCATATGaagattcatactggtgatgaatataagtgcaatgaatgtgactataagaCGACATGGAAACATTCTCTAAAAATACACATGAACATTCATAAAGGTGAtctatataaatTAAAAAGTTAtcgtttttataacaaaaatgaagttaCTCACCCACAATATGCTCACATCGAAATGTATGAAAGGGGTTATGATGGGATATCCACTGAAAATTCAGACATTAAAACCTCGGAGGTTGATTTTAAACCCGAGTTCATATCACGTTTAATACCAAAAATTGATTGGAAAGCTTTATGGGAAGCAGCCGAAAGCGTAGGGTACTTGGAAGATTTACCAAAAGAAGTTATAGAGAACTACGAAAATGATATTGATTTTTTGAGAAAGGCCCACAAAGTTTTATTGGAGATTGACATTGTAAATGGAGAGTTAATATGTCCAGAGACGGGTCGCaaatttccaataaataatgGCATTCCaaatatgttattaaacgaGGACGAAGTTTAA
Protein Sequence
MDVDSNKNFSIKSEVIVNETFSICGKYEDYAREQFKLDPVEYESKELKLEPIDFQQPFKCKEENNLVPVTSTQYICNECNVMTTDKNTLKKHLKIIKNVQYLCKECNFKTWLECSIKEHLRIHNKMGGTYISKKFYSKTQQIFSLTPQLETAKICNECDYKTLYKRNLKAHMKIHMDGEHKCQECDFKTIWQQSLKEHVKIHSGDEYKCIECDYKTPWKLSLKNHMTIHTGDEYKCKECDYKTPWKQNLKSHMKIHTGKEYFCDECDYKTAQERNLKNHMNIHTGEIYKCSECNYKTVWKYSLNIHMKIHSGDEYKCNECDYKTTWKHSLKTHMKIHKGELYKCKECDYNTACKSNLKIHMSIHTGKQYKCSECEYKTVWKHSLKIHMKIHSGDLYKCKECDYNTARNSDLKIHMSIHTREEYKCSECDYKTVWKYSLKTHMKIHSGDEYKCKECDYKTVRKTYLTSHMKIHTGDEYKCNECDYKTTWKHSLKIHMNIHKGDLYKLKSYRFYNKNEVTHPQYAHIEMYERGYDGISTENSDIKTSEVDFKPEFISRLIPKIDWKALWEAAESVGYLEDLPKEVIENYENDIDFLRKAHKVLLEIDIVNGELICPETGRKFPINNGIPNMLLNEDEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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